Your message dated Tue, 18 Jun 2013 10:17:58 +0000
with message-id <e1uosz8-00013y...@franck.debian.org>
and subject line Bug#712328: fixed in biomaj 1.2.1-3
has caused the Debian Bug report #712328,
regarding biomaj: FTBFS: [javac]
/«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/ant/task/BmajExecute.java:543:
cannot find symbol
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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immediately.)
--
712328: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=712328
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: biomaj
Version: 1.2.1-2
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20130609 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part:
> make[1]: Entering directory `/«PKGBUILDDIR»'
> echo
>
> ant -Dant.build.javac.source=1.5 -Dant.build.javac.target=1.5 -f
> usr/share/biomaj/build.xml
> Buildfile: /«PKGBUILDDIR»/usr/share/biomaj/build.xml
>
> test_env:
>
> compile:
> [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/build/classes
> [mkdir] Created dir: /«PKGBUILDDIR»/usr/share/biomaj/dist
> [javac] /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: warning:
> 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
> to false for repeatable builds
> [javac] Compiling 137 source files to
> /«PKGBUILDDIR»/usr/share/biomaj/build/classes
> [javac]
> /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/ant/task/BmajExecute.java:543:
> cannot find symbol
> [javac] symbol : method
> getRecursiveProperty(java.util.Hashtable<java.lang.String,java.lang.Object>,java.lang.String)
> [javac] location: class org.inria.biomaj.exe.bank.BankFactory
> [javac] String res =
> BankFactory.getRecursiveProperty(getProject().getProperties(), key);
> [javac] ^
> [javac] Note: Some input files use or override a deprecated API.
> [javac] Note: Recompile with -Xlint:deprecation for details.
> [javac] Note:
> /«PKGBUILDDIR»/usr/share/biomaj/src/org/inria/biomaj/ant/task/BmajSymlink.java
> uses unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] 1 error
>
> BUILD FAILED
> /«PKGBUILDDIR»/usr/share/biomaj/build.xml:110: Compile failed; see the
> compiler error output for details.
>
> Total time: 10 seconds
> make[1]: *** [override_dh_auto_build] Error 1
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2013/06/09/biomaj_1.2.1-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: biomaj
Source-Version: 1.2.1-3
We believe that the bug you reported is fixed in the latest version of
biomaj, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 712...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Olivier Sallou <osal...@debian.org> (supplier of updated biomaj package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 18 Jun 2013 11:39:36 +0200
Source: biomaj
Binary: biomaj biomaj-properties
Architecture: source all
Version: 1.2.1-3
Distribution: unstable
Urgency: low
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Olivier Sallou <osal...@debian.org>
Description:
biomaj - biological data-bank updater
biomaj-properties - biological data-bank updater - example properties files
Closes: 712328
Changes:
biomaj (1.2.1-3) unstable; urgency=low
.
* Add patch to manage ant properties api change (Closes: #712328).
Checksums-Sha1:
b0c98630b51605fef72b8981bdb1166c928de713 2473 biomaj_1.2.1-3.dsc
3cd7e3a58d426d6f1ce38e89443d5d4ec734a12b 26808 biomaj_1.2.1-3.debian.tar.gz
0d4fe33395064119e3fbf6c69cbc864a56dadea0 3771736 biomaj_1.2.1-3_all.deb
abb75fca815cd50ab0ff7ce1118b7c031ca377f0 35210
biomaj-properties_1.2.1-3_all.deb
Checksums-Sha256:
32a6dff14aefd6d8a7251161e603301d92efa3242d3a64a50fbadab39d31da7a 2473
biomaj_1.2.1-3.dsc
96ca3a8eb7c949340cee65772bd714e661b3947d52ae4837604387e87fe7cec7 26808
biomaj_1.2.1-3.debian.tar.gz
d277a44bdf9817093781c03a14670c0338790109f76092692ffadae1f4c92c51 3771736
biomaj_1.2.1-3_all.deb
1b56ab497f2d3e0aba387e7233fcefe3f801a826d61eb20429539c3ad940124e 35210
biomaj-properties_1.2.1-3_all.deb
Files:
bffaa7aad40444f661709454cea21ef3 2473 science optional biomaj_1.2.1-3.dsc
bcc1e10416f21e65979be9439e894290 26808 science optional
biomaj_1.2.1-3.debian.tar.gz
82563eece6bffa5e2e925bc968743a6f 3771736 science optional
biomaj_1.2.1-3_all.deb
67c6f6ccc82edbd84bc18bbeccd3d43a 35210 science optional
biomaj-properties_1.2.1-3_all.deb
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