Your message dated Wed, 26 Jun 2013 15:27:47 +0000 with message-id <e1urrdl-0007wl...@franck.debian.org> and subject line Bug#713461: fixed in theseus 2.0.6-1 has caused the Debian Bug report #713461, regarding theseus: FTBFS: ld: ./lib/libdistfit.a(chisqr_dist.o): undefined reference to symbol 'lgamma_r@@GLIBC_2.2.5' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 713461: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=713461 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: theseus Version: 1.6.2-2 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20130620 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Maybe you need to add explicitly the offending lib to LD flags. Relevant part: > /usr/bin/gcc -O3 -ffast-math -fstrict-aliasing -funroll-loops > -fomit-frame-pointer -g -fstack-protector --param=ssp-buffer-size=4 -Wformat > -Werror=format-security -Werror -Wno-error=unused-result -Wall -pedantic > -std=c99 -D_FORTIFY_SOURCE=2 -Wl,-z,relro -L./lib theseus.o CovMat.o > DistMat.o Embed.o Error.o FragCds.o FragDist.o HierarchVars.o lodmats.o > MultiPose.o MultiPose2MSA.o MultiPoseMix.o PCAstats.o pdbIO.o pdbMalloc.o > pdbStats.o pdbUtils.o QuarticHornFrag.o RandCds.o pdbSSM.o ProcGSLSVD.o > ProcGSLSVDOcc.o ProcJacobiSVD.o GibbsMet.o qcprot.o termcol.o theseuslib.o > -lgsl -lgslcblas -ldistfit -lmsa -ldssplite -ldltmath -lDLTutils -ltheseus > -lpthread -o theseus > /usr/bin/ld: ./lib/libdistfit.a(chisqr_dist.o): undefined reference to symbol > 'lgamma_r@@GLIBC_2.2.5' > /lib/x86_64-linux-gnu/libm.so.6: error adding symbols: DSO missing from > command line > collect2: error: ld returned 1 exit status The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2013/06/20/theseus_1.6.2-2_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: theseus Source-Version: 2.0.6-1 We believe that the bug you reported is fixed in the latest version of theseus, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 713...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated theseus package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 Format: 1.8 Date: Wed, 26 Jun 2013 16:34:53 +0200 Source: theseus Binary: theseus Architecture: source amd64 Version: 2.0.6-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: theseus - superimpose macromolecules using maximum likelihood Closes: 713461 Changes: theseus (2.0.6-1) unstable; urgency=low . * New upstream version - Adapt patches - debian/patches/30_fix_gcc_options.patch: Enable build on Linux Closes: #713461 * debian/control: - Remove DM-Upload-Allowed - cme fix dpkg-control * debian/rules: use xz compression Checksums-Sha1: cfbea9c4fd050c60774dc76ca1414f87a7354eed 1338 theseus_2.0.6-1.dsc 1d36cc49be837d94dc6f1e6a3a970cfc63c587db 1257560 theseus_2.0.6.orig.tar.gz 1bd74ce6de6db805b63b99d9569b37ac7b4bfc13 12459 theseus_2.0.6-1.debian.tar.gz 5dca801df3d91ecc018162f5e826fc19da2dab2e 1259180 theseus_2.0.6-1_amd64.deb Checksums-Sha256: 8fdbb7b45d327491b99e51fb935d28c0c728fc5c8302b5537ddb7b79a3ce7f60 1338 theseus_2.0.6-1.dsc f63f4d5fd9ce9d30048312e31807a1a413b433e2bbcfd0cefb3703f455551c23 1257560 theseus_2.0.6.orig.tar.gz 3be53916a8dedc03195329888e7c37bc7df5009cb9f323cf1431a729930b7829 12459 theseus_2.0.6-1.debian.tar.gz 0114470a9c81825a784943bb81d020c2f54c48410fbe97d1e621458121849192 1259180 theseus_2.0.6-1_amd64.deb Files: 3418e563bff1a96e8c870a97afd32c83 1338 science optional theseus_2.0.6-1.dsc 61775e01646ac2038b442cfd1cae38cb 1257560 science optional theseus_2.0.6.orig.tar.gz fb6e4159e2968f4e02c3b70998a50810 12459 science optional theseus_2.0.6-1.debian.tar.gz 2c34e1b8cadfc9021fc49d37a4ffa287 1259180 science optional theseus_2.0.6-1_amd64.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1.4.12 (GNU/Linux) iEYEARECAAYFAlHLBdQACgkQYDBbMcCf01qZfgCcDfAE21KWtL2nxgCVHe9yvaTx fBYAn2TpAQMd5gyRlws+XoyKz3SZ/1SX =uk2f -----END PGP SIGNATURE-----
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