I see a test failing in t/Ontology/IO/obo.t line 47 at is (scalar(@terms), 5), used to work in a previous perl release:
Code of test: my $parser = Bio::OntologyIO->new( -format => "obo", ^I^I -file => test_input_file('so.obo')); my $ont = $parser->next_ontology(); ok ($ont); is ($ont->name(), "sequence"); my @roots = $ont->get_root_terms(); is (scalar(@roots), 1); is ($roots[0]->name(), "Sequence_Ontology"); is ($roots[0]->identifier(), "SO:0000000"); my @terms = $ont->get_child_terms($roots[0]); is (scalar(@terms), 5); According previous tests, root ontology is correctly found in file (and code did not changed, it is only perl update). though only 2 child terms are found (test result) while 5 are in the file. Seems ontology parsing fail with new release. Upstream at CPAN successfully build on perl 5.18.0. Could it be a dependency issue? To be investigated. -- gpg key id: 4096R/326D8438 (keyring.debian.org) Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438 -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org