Your message dated Wed, 30 Jul 2014 17:04:58 +0000
with message-id <e1xcxjc-0001fu...@franck.debian.org>
and subject line Bug#753217: fixed in r-bioc-biovizbase 1.12.1-1
has caused the Debian Bug report #753217,
regarding r-bioc-biovizbase: FTBFS: ERROR: lazy loading failed for package
'biovizBase'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
753217: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=753217
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: r-bioc-biovizbase
Version: 1.10.7-1
Severity: serious
Tags: jessie sid
User: debian...@lists.debian.org
Usertags: qa-ftbfs-20140628 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/«PKGBUILDDIR»/src'
> make[1]: Leaving directory '/«PKGBUILDDIR»/src'
> installing to
> /«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase/libs
> ** R
> ** data
> ** inst
> ** preparing package for lazy loading
> Error : objects 'GAlignments', 'GAlignmentPairs', 'Union',
> 'IntersectionNotEmpty', 'IntersectionStrict', 'findSpliceOverlaps' are not
> exported by 'namespace:GenomicRanges'
> ERROR: lazy loading failed for package 'biovizBase'
> * removing
> '/«PKGBUILDDIR»/debian/r-bioc-biovizbase/usr/lib/R/site-library/biovizBase'
> make: *** [R_any_arch] Error 1
The full build log is available from:
http://aws-logs.debian.net/ftbfs-logs/2014/06/28/r-bioc-biovizbase_1.10.7-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: r-bioc-biovizbase
Source-Version: 1.12.1-1
We believe that the bug you reported is fixed in the latest version of
r-bioc-biovizbase, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 753...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-biovizbase package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 13 Jun 2014 13:38:53 +0200
Source: r-bioc-biovizbase
Binary: r-bioc-biovizbase
Architecture: source amd64
Version: 1.12.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
r-bioc-biovizbase - GNU R basic graphic utilities for visualization of genomic
data
Closes: 753217
Changes:
r-bioc-biovizbase (1.12.1-1) unstable; urgency=medium
.
* New upstream release
Closes: #753217
* Add new (Build-)Dependencies: r-bioc-genomicalignments,
r-bioc-variantannotation
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