Your message dated Wed, 30 Jul 2014 21:41:46 +0000 with message-id <e1xcbd4-0002j7...@franck.debian.org> and subject line Bug#753193: fixed in r-bioc-cummerbund 2.6.1-1 has caused the Debian Bug report #753193, regarding r-bioc-cummerbund: FTBFS: ERROR: lazy loading failed for package 'cummeRbund' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 753193: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=753193 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-cummerbund Version: 2.4.1-1 Severity: serious Tags: jessie sid User: debian...@lists.debian.org Usertags: qa-ftbfs-20140628 qa-ftbfs Justification: FTBFS on amd64 Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > fakeroot debian/rules binary > test -x debian/rules > dh_testroot > dh_prep > dh_installdirs -A > mkdir -p "." > dh_installdirs usr/lib/R/site-library > echo "R:Depends=r-base-core (>= 3.1.0-1)" >> > debian/r-bioc-cummerbund.substvars > if test -f /usr/bin/xvfb-run; then \ > xvfb-run -a \ > R CMD INSTALL -l > /«PKGBUILDDIR»/debian/r-bioc-cummerbund/usr/lib/R/site-library --clean \ > . ; \ > else \ > R CMD INSTALL -l > /«PKGBUILDDIR»/debian/r-bioc-cummerbund/usr/lib/R/site-library \ > --clean . ;\ > fi > * installing *source* package 'cummeRbund' ... > ** R > ** data > ** inst > ** preparing package for lazy loading > Error : objects 'GAlignments', 'GAlignmentPairs', 'Union', > 'IntersectionNotEmpty', 'IntersectionStrict', 'findSpliceOverlaps' are not > exported by 'namespace:GenomicRanges' > Error : package 'rtracklayer' could not be loaded > ERROR: lazy loading failed for package 'cummeRbund' > * removing > '/«PKGBUILDDIR»/debian/r-bioc-cummerbund/usr/lib/R/site-library/cummeRbund' > make: *** [R_any_arch] Error 1 The full build log is available from: http://aws-logs.debian.net/ftbfs-logs/2014/06/28/r-bioc-cummerbund_2.4.1-1_unstable.log A list of current common problems and possible solutions is available at http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute! About the archive rebuild: The rebuild was done on EC2 VM instances from Amazon Web Services, using a clean, minimal and up-to-date chroot. Every failed build was retried once to eliminate random failures.
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--- Begin Message ---Source: r-bioc-cummerbund Source-Version: 2.6.1-1 We believe that the bug you reported is fixed in the latest version of r-bioc-cummerbund, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 753...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-cummerbund package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 30 Jul 2014 21:40:29 +0200 Source: r-bioc-cummerbund Binary: r-bioc-cummerbund Architecture: source all Version: 2.6.1-1 Distribution: unstable Urgency: low Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: r-bioc-cummerbund - tool for analysis of Cufflinks RNA-Seq output Closes: 753193 Changes: r-bioc-cummerbund (2.6.1-1) unstable; urgency=low . * New upstream version Closes: #753193 * Drop Carlos Borroto from Uploaders at his request * Moved debian/upstream to debian/upstream/metadata Checksums-Sha1: 642e87fd6dc02d4266b8e2b721d75eaab3b0162a 2159 r-bioc-cummerbund_2.6.1-1.dsc 5b30ae0e24fab92b0f30c894889fedd5771a418d 2291914 r-bioc-cummerbund_2.6.1.orig.tar.gz 4b263172a38dd1a8b8f651abffd3d4171b50b061 2500 r-bioc-cummerbund_2.6.1-1.debian.tar.xz 01e975bbbbfcd9c7c71bb186ab9551347648c76b 1850540 r-bioc-cummerbund_2.6.1-1_all.deb Checksums-Sha256: 7af1f68138639605f1c617b6e3a97c9bd2b998da303cf5c1fc099264d6d46483 2159 r-bioc-cummerbund_2.6.1-1.dsc c7d4a31167024e6ad3c6e367894b4a81fc5d710beee7fd2cd63ccae0cc4ab876 2291914 r-bioc-cummerbund_2.6.1.orig.tar.gz ee7c158cf0ff9a4f78810fd8631cc2de22c673c81da89acfc7bc4ee2db13d55f 2500 r-bioc-cummerbund_2.6.1-1.debian.tar.xz b93f3a05e03291da759df2d34c8ec0459ceca8eb10ad4ed5ff45b4e73aa5fe06 1850540 r-bioc-cummerbund_2.6.1-1_all.deb Files: 38552382c8f003509b6e18f9323b6cae 1850540 gnu-r optional r-bioc-cummerbund_2.6.1-1_all.deb 4b0f7c46515f0a5068934cf6eda1f539 2159 gnu-r optional r-bioc-cummerbund_2.6.1-1.dsc f77ff3ff88e8859c7567f29c4e8d0245 2291914 gnu-r optional r-bioc-cummerbund_2.6.1.orig.tar.gz 394058099fa3db33cae05ac0e995ad71 2500 gnu-r optional r-bioc-cummerbund_2.6.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJT2WJuAAoJEFeKBJTRxkbRCC8P/ihMO9lkzI+8yjRXusI1IJMt IbXSgynYEi2H1NV5kt2l3A+aU2Xje3s6X+Xkco2WUNpIXsg0fmxyX1NR0ldYlSRZ +saP05hoBUcynJF71d73YaZYWNNNEoukX1hKDkf+BpcDTZ7OoAFn5CtndKwujrnH yaepAxCbwVyoePqH4uwrdv952B1pAbpxZfySzT+DzhgqChO3i2KDNMUOK0oKPnGp fZCYMdF69OjtJzAEaWtnS6W09b5v2oCCKtS8d3iy810U7oJk8Lj5B4CnEZaAl3jX O+mdwro0NDMJexB5jhTVwdmyIqms5Gsi22IAlpcJ7iZq+bbXo42CybcwQTYy5uvo 23TEVNyRUBriYoa66stiQjH5g7ytGazkSjZmSNzEO3uPjBVb1TwskqnG252nJYI7 4otvMWQ3jUUfFdageXer1czOeQfo4/F5vlqjeccE5mlyB08jh3Cd4w2nTZVu9CDr K4wIXiJsWzIKIbFmXZRWkUgvnGmy0SgRlUNSfgzA76qqmp02T8nyA9MEsHSIP1aq SuNeW+Zwr9ryf71UdQywtno+EhLQBZ/zZmcx4thxkKccTR4G3zUj4qlw7usbJgab hptJKQBjcJpYD6GxYniRiwtV8WwZwUKMvFzH1P824jx4DGnXJfdJJyoqLuzuowvH CWNd9Z0n5GuOin/lRexV =78pe -----END PGP SIGNATURE-----
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