Your message dated Wed, 20 Aug 2014 14:16:24 -0500
with message-id <20140820191624.ga10...@sumost.ca>
and subject line Fixed by ITK 4.6.0-3 upload
has caused the Debian Bug report #757589,
regarding elastix: FTFBFS against insighttoolkit 4.6
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
757589: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=757589
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: elastix
Version: 4.7-2
Severity: serious
Justification: fails to build from source (but built successfully in the past)
elastix fails to build against insighttoolkit 4.6:
| cd
/«PKGBUILDDIR»/obj-x86_64-linux-gnu/Components/FixedImagePyramids/FixedRecursivePyramid
&& /usr/lib/ccache/c++ -DELASTIX_USE_OPENMP
-DITK_IO_FACTORY_REGISTER_MANAGER -g -O2 -fstack-protector
--param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2
-fopenmp -O3 -DNDEBUG
-I/«PKGBUILDDIR»/obj-x86_64-linux-gnu/ITKIOFactoryRegistration
-I/tmp/buildd/insighttoolkit4-4.6.0/BUILD/Modules/ThirdParty/HDF5/src
-I/usr/include/dcmtk -I/usr/include/dcmtk/oflog -I/usr/include/dcmtk/ofstd
-I/usr/include/dcmtk/dcmtls -I/usr/include/dcmtk/dcmsr
-I/usr/include/dcmtk/dcmsign -I/usr/include/dcmtk/dcmqrdb
-I/usr/include/dcmtk/dcmpstat -I/usr/include/dcmtk/dcmnet
-I/usr/include/dcmtk/dcmjpls -I/usr/include/dcmtk/dcmjpeg
-I/usr/include/dcmtk/dcmimgle -I/usr/include/dcmtk/dcmimage
-I/usr/include/dcmtk/dcmdata -I/usr/include/dcmtk/config
-I/usr/include/x86_64-linux-gnu -I/usr/include/gdcm-2.4 -I/usr/include/ITK-4.6
-I/«PKGBUILDDIR»/src/Common -I/«PKGBUILDDIR»/src/Common/CostFunctions
-I/«PKGBUILDDIR»/src/Common/CUDA -I/«PKGBUILDDIR»/src/Common/ImageSamplers
-I/«PKGBUILDDIR»/src/Common/KNN -I/«PKGBUILDDIR»/src/Common/KNN/ann_1.1/include
-I/«PKGBUILDDIR»/src/Common/LineSearchOptimizers
-I/«PKGBUILDDIR»/src/Common/ParameterFileParser
-I/«PKGBUILDDIR»/src/Common/Transforms -I/«PKGBUILDDIR»/src/Common/xout
-I/«PKGBUILDDIR»/src/Common/MevisDicomTiff -I/«PKGBUILDDIR»/src/Core
-I/«PKGBUILDDIR»/src/Core/Install -I/«PKGBUILDDIR»/src/Core/Kernel
-I/«PKGBUILDDIR»/src/Core/ComponentBaseClasses
-I/«PKGBUILDDIR»/src/Core/Configuration -I/«PKGBUILDDIR»/src/Core/Main
-I/«PKGBUILDDIR»/src/Components/FixedImagePyramids
-I/«PKGBUILDDIR»/src/Components/ImageSamplers
-I/«PKGBUILDDIR»/src/Components/Interpolators
-I/«PKGBUILDDIR»/src/Components/Metrics
-I/«PKGBUILDDIR»/src/Components/MovingImagePyramids
-I/«PKGBUILDDIR»/src/Components/Optimizers
-I/«PKGBUILDDIR»/src/Components/Registrations
-I/«PKGBUILDDIR»/src/Components/ResampleInterpolators
-I/«PKGBUILDDIR»/src/Components/Resamplers
-I/«PKGBUILDDIR»/src/Components/Transforms
-I/«PKGBUILDDIR»/obj-x86_64-linux-gnu -o
CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o -c
/«PKGBUILDDIR»/src/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx
| In file included from
/«PKGBUILDDIR»/src/Core/ComponentBaseClasses/elxTransformBase.h:341:0,
| from /«PKGBUILDDIR»/src/Core/Kernel/elxElastixTemplate.h:35,
| from /«PKGBUILDDIR»/src/Core/Install/elxIncludes.h:35,
| from
/«PKGBUILDDIR»/src/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.h:17,
| from
/«PKGBUILDDIR»/src/Components/FixedImagePyramids/FixedRecursivePyramid/elxFixedRecursivePyramid.cxx:15:
| /«PKGBUILDDIR»/src/Core/ComponentBaseClasses/elxTransformBase.hxx:25:51:
fatal error: itkTransformToDisplacementFieldSource.h: No such file or directory
| #include "itkTransformToDisplacementFieldSource.h"
| ^
| compilation terminated.
| make[3]: ***
[Components/FixedImagePyramids/FixedRecursivePyramid/CMakeFiles/FixedRecursivePyramid.dir/elxFixedRecursivePyramid.cxx.o]
Error 1
Full build log is available at
https://people.debian.org/~sramacher/logs/itk4/elastix_4.7-2_amd64-20140809-1726.log.
Please take a look.
Cheers
--
Sebastian Ramacher
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Description: Digital signature
--- End Message ---
--- Begin Message ---
The build failure was due to ITK 4.6 obsoleting some classes that
Elastix requires. I was able to tweak the configuration (enabled
"compatibility" modules) of ITK to provide the obsolete classes
and confirmed that Elastix does now build.
Note: the ITK 4.6.0-3 build on amd64 has not yet successfully
completed. I verified on i386.
-Steve
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Description: Digital signature
--- End Message ---
