Your message dated Tue, 02 Sep 2014 09:05:50 +0000 with message-id <[email protected]> and subject line Bug#751277: fixed in python-biopython 1.64+dfsg-4 has caused the Debian Bug report #751277, regarding python-biopython: FTBFS on mips* powerpc s390x to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 751277: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=751277 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: python-biopython Version: 1.64+dfsg-1 Severity: serious Justification: fails to build from source (but built successfully in the past) All four archs fail with a similar error: E: pybuild pybuild:256: test: plugin custom failed with: exit code=1: mkdir -p /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \ cp -a Doc/Tutorial.tex /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Doc; \ cp -a Tests /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build; \ cd /«BUILDDIR»/python-biopython-1.64+dfsg/.pybuild/pythonX.Y_2.7/build/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/tmp python2.7 run_tests.py --offline dh_auto_test: pybuild --test -i python{version} -p 2.7 --test --system=custom --test-args=mkdir -p {build_dir}/Doc; \ cp -a Doc/Tutorial.tex {build_dir}/Doc; \ cp -a Tests {build_dir}; \ cd {build_dir}/Tests; \ env DIALIGN2_DIR=/usr/share/dialign EMBOSS_ROOT=/usr/lib/emboss HOME=/tmp {interpreter} run_tests.py --offline --dir . returned exit code 13 make[1]: *** [override_dh_auto_test] Error 13 debian/rules:56: recipe for target 'override_dh_auto_test' failed make[1]: Leaving directory '/«BUILDDIR»/python-biopython-1.64+dfsg' make: *** [build-arch] Error 2 debian/rules:48: recipe for target 'build-arch' failed
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--- Begin Message ---Source: python-biopython Source-Version: 1.64+dfsg-4 We believe that the bug you reported is fixed in the latest version of python-biopython, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated python-biopython package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 01 Sep 2014 15:59:30 +0200 Source: python-biopython Binary: python-biopython python3-biopython python-biopython-doc python-biopython-sql python3-biopython-sql Architecture: source amd64 all Version: 1.64+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: python-biopython - Python library for bioinformatics (implemented in Python 2) python-biopython-doc - Documentation for the Biopython library python-biopython-sql - Biopython support for the BioSQL database schema (Python 2) python3-biopython - Python library for bioinformatics (implemented in Python 3) python3-biopython-sql - Biopython support for the BioSQL database schema (Python 3) Closes: 743927 751277 Changes: python-biopython (1.64+dfsg-4) unstable; urgency=medium . * debian/patches/fix_test_problem_on_powerpc.patch: Patch provided by upstream to run test suite on PowerPC (thanks to Michiel de Hoon <[email protected]>) Closes: #751277 * Install egg metadata Closes: #743927 * Add samtools to Build-Depends + Recommends since it is checked in test suite Checksums-Sha1: 621d5abbb498eafd8e004d259ba57e9b6b802d76 2908 python-biopython_1.64+dfsg-4.dsc 459abab80dc48d958a8f5d0dc22c03fe59f6ca5b 12296 python-biopython_1.64+dfsg-4.debian.tar.xz e3e1edc24337fff090db9c6def51df6b18e6bd09 1164978 python-biopython_1.64+dfsg-4_amd64.deb ea6a320a6bc4419af173ee7e2c6b93ef3065858a 1133068 python3-biopython_1.64+dfsg-4_amd64.deb 9065261a8f1e295bbd30cb9dae9353e9ddbf543f 9762900 python-biopython-doc_1.64+dfsg-4_all.deb f372662646305890c73b296b88a99dc6c1d1a065 27580 python-biopython-sql_1.64+dfsg-4_all.deb fdbd4f3b7117d0ed540989e2089f05cf39722f71 27646 python3-biopython-sql_1.64+dfsg-4_all.deb Checksums-Sha256: a8002b4243438f147c6acdbd805a134a00f418ccf27c1dfaba5d62f973297862 2908 python-biopython_1.64+dfsg-4.dsc 509c11669f518974ec8444deff028492dd7be720e7a05e6531f302a2cba2aafb 12296 python-biopython_1.64+dfsg-4.debian.tar.xz 17cc1602d710ebde8b2d5976649cd07f9a670832504d284fb7be2bb255b33597 1164978 python-biopython_1.64+dfsg-4_amd64.deb e3b8ad51de511ac494122a98d8eb9f8321170cded295d855e0c1a03f94c2d4c5 1133068 python3-biopython_1.64+dfsg-4_amd64.deb 577620d023ae9dcba68374894b6fdc5dd588f1fbfbfa848d9d4fc13087dde467 9762900 python-biopython-doc_1.64+dfsg-4_all.deb ed808e5b426bc97b05f84acc59d824f9ea3c3f8fd5c8fe56846935b09bc4843e 27580 python-biopython-sql_1.64+dfsg-4_all.deb 2d8865df6654de661117bc9a259c4685eccc39a14d4ec8ce357c3f99dae167a0 27646 python3-biopython-sql_1.64+dfsg-4_all.deb Files: 53d91fba596cda35b1dff3f5eaccd9e4 1164978 python optional python-biopython_1.64+dfsg-4_amd64.deb 424f7248295f49ed9bebb1112c1a50c3 1133068 python optional python3-biopython_1.64+dfsg-4_amd64.deb 79b415de5c35b5226366abbcd2a91cd7 9762900 doc optional python-biopython-doc_1.64+dfsg-4_all.deb 03ec3a5a00ed63ac86eaa04e72a1c54f 27580 python optional python-biopython-sql_1.64+dfsg-4_all.deb c8db1d719b5e1fc78c8ecec0e5464645 27646 python optional python3-biopython-sql_1.64+dfsg-4_all.deb 4cbbfd6579cf5008e5294bdaafaf4b1f 2908 python optional python-biopython_1.64+dfsg-4.dsc 65e12f505a8c22fe489bc9f4479029b5 12296 python optional python-biopython_1.64+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJUBX02AAoJEFeKBJTRxkbRcwoQAJB/fk+u/gSXehuCTXZg01TE nU36bpzowQBrcLS9mqy01h6NA3q/cifT4Q9ehbLluwjTf32OGjPq7V0c0ZC3wckZ 7XqlsLWHvLzYG9ofeKfw/2Bp5mCnn5i3LyR2gko3tu15zquCEAkR/vsZEntHDy4+ ssFu3KfbB3kxQ7tq4mRNxqGWx4ahOcWaSHStn0ro1Pd2dRQje548zOyQ0WM0XJPu 8E/B2rOaRXI5m36G97D4H8Gk01Qvub0dpIhHdVqH247/nDFe67B9czxdgCO2v9vj By5zpCgj+67XFVH3OZ+tYL9BDeqGwMb3s9L+INveABNHqMqK4joTUXlCP0cvBGsz RO/iJ91KxNpU3SJZLTXMKQfrUSnx/Hj8nO+ktoNVgQdfH00LAQhRyG6M6yh5IWgs byksu00U6IYjAt6D7yQCRYpwm6koG+yZEzyJoAX9D2cOZAcdy/AgxQbRkoyQ1/UD Tf7C6NgmSxW+tDCE//GAavR0BrRxZ/hpfgz2aeQevVQoUosSdNeVpqoFAIdegH+L ozWsXyI0Vd3e8CXoRW9fRWM8A3kevwiYg8dIvJxHFh2vpP1cY01uaUHohebvvJjO NBey75ENuAxQy55S7JkPHbQRIk09AGQLQaPIbWXrcvoSbR+VrkcbGpSUzQq5crSj prJ/jhTdJgB03cMsRqeY =MnQt -----END PGP SIGNATURE-----
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