Hi Michael, On Thu, Feb 26, 2015 at 09:41:35PM +0000, Michael Crusoe wrote: > The command I gave you was from their webpage; alas it contains two small > errors: should be `-phred33` (single dash) and the adapter file needs to be > a correct path; the file extension is missing. > > TrimmomaticSE -phred33 input.fq.gz output.fq.gz > ILLUMINACLIP:/usr/share/trimmomatic/TruSeq3-SE.fa:2:30:10 > LEADING:3 TRAILING:3 SLIDINGWINDOW:4:15 MINLEN:36 > > This runs successfully on my system with local data.
Thanks for checking. I have uploaded to unstable and will file an unblock bug tomorrow. If anybody else could check the uploaded package as well this would be cool. > > Well, we actually can add our own to debian/tests, can't we? > > > > Right. I've tracked down the sequences they used in their paper but I can't > find license nor copyright information: > http://www.ebi.ac.uk/ena/data/view/SRX131047 > > While these files are rather large (113MiB) I could generate a subset for > testing purposes. I'm looking forward to this. Kind regards Andreas. -- http://fam-tille.de -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org
