Package: murasaki Version: 1.68.6-1 Severity: serious Justification: fails to build from source (but built successfully in the past)
Dear Maintainer, Package is failing to build on buildd. I'm working on a fix and I will attach it as soon as possible. Full log is attached. Build Log tail: dh_installman # create manpages for PL files mkdir -p debian/murasaki-common/usr/share/man/man1 for pscript in debian/murasaki-common/usr/lib/debian-med/bin/* ; do \ pod2man ${pscript} > debian/murasaki-common/usr/share/man/man1/`basename ${pscript}`.1 ; \ done Can't open debian/murasaki-common/usr/lib/debian-med/bin/*: No such file or directory at /usr/bin/pod2man line 71. make[1]: *** [override_dh_installman] Error 2 debian/rules:24: recipe for target 'override_dh_installman' failed make[1]: Leaving directory '/«PKGBUILDDIR»' make: *** [binary-arch] Error 2 debian/rules:13: recipe for target 'binary-arch' failed dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2
sbuild (Debian sbuild) 0.64.0 (17 May 2013) on mipsel-manda-02.debian.org +------------------------------------------------------------------------------+ ? murasaki 1.68.6-1 (mipsel) 22 Jun 2015 15:38 ? +------------------------------------------------------------------------------+ Package: murasaki Version: 1.68.6-1 Source Version: 1.68.6-1 Distribution: sid Machine Architecture: mipsel Host Architecture: mipsel Build Architecture: mipsel W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot I: NOTICE: Log filtering will replace 'build/murasaki-FaaXSQ/murasaki-1.68.6' with '?PKGBUILDDIR?' I: NOTICE: Log filtering will replace 'build/murasaki-FaaXSQ' with '?BUILDDIR?' I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/sid-mipsel-sbuild-4a4978e5-063f-4ea4-add2-46ac86e5f19f' with '?CHROOT?' W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot +------------------------------------------------------------------------------+ ? Update chroot ? +------------------------------------------------------------------------------+ W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Get:1 http://debian.netcologne.de unstable InRelease [204 kB] Get:2 http://ftp.debian.org unstable InRelease [204 kB] Get:3 http://incoming.debian.org buildd-unstable InRelease [111 kB] Get:4 http://debian.netcologne.de unstable/main Sources [7965 kB] Get:5 http://ftp.debian.org unstable/main Sources [7970 kB] Get:6 http://incoming.debian.org buildd-unstable/main Sources [124 kB] Get:7 http://incoming.debian.org buildd-unstable/contrib Sources [1796 B] Get:8 http://incoming.debian.org buildd-unstable/non-free Sources [912 B] Get:9 http://incoming.debian.org buildd-unstable/main mipsel Packages [140 kB] Get:10 http://incoming.debian.org buildd-unstable/contrib mipsel Packages [32 B] Get:11 http://debian.netcologne.de unstable/contrib Sources [58.3 kB] Get:12 http://debian.netcologne.de unstable/non-free Sources [105 kB] Get:13 http://debian.netcologne.de unstable/main mipsel Packages [7121 kB] Get:14 http://ftp.debian.org unstable/contrib Sources [58.3 kB] Get:15 http://ftp.debian.org unstable/non-free Sources [105 kB] Get:16 http://ftp.debian.org unstable/main mipsel Packages [7124 kB] Get:17 http://debian.netcologne.de unstable/contrib mipsel Packages [42.7 kB] Get:18 http://ftp.debian.org unstable/contrib mipsel Packages [42.7 kB] Fetched 31.4 MB in 47s (657 kB/s) Reading package lists... +------------------------------------------------------------------------------+ ? Fetch source files ? +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Download source files with APT ------------------------------ W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Reading package lists... Building dependency tree... Reading state information... NOTICE: 'murasaki' packaging is maintained in the 'Svn' version control system at: svn://anonscm.debian.org/debian-med/trunk/packages/murasaki/trunk/ Need to get 316 kB of source archives. Get:1 http://ftp.debian.org/debian/ unstable/main murasaki 1.68.6-1 (dsc) [2244 B] Get:2 http://ftp.debian.org/debian/ unstable/main murasaki 1.68.6-1 (tar) [308 kB] Get:3 http://ftp.debian.org/debian/ unstable/main murasaki 1.68.6-1 (diff) [5680 B] Fetched 316 kB in 0s (2426 kB/s) Download complete and in download only mode Check arch ---------- W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Merged Build-Depends: build-essential, fakeroot Filtered Build-Depends: build-essential, fakeroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/?BUILDDIR?/resolver-zsmmRY/apt_archive/sbuild-build-depends-core-dummy.deb'. W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot OK W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Reading package lists... +------------------------------------------------------------------------------+ ? Install core build dependencies (apt-based resolver) ? +------------------------------------------------------------------------------+ Installing build dependencies W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-core-dummy debconf: delaying package configuration, since apt-utils is not installed 0 upgraded, 1 newly installed, 0 to remove and 73 not upgraded. Need to get 0 B/820 B of archives. After this operation, 0 B of additional disk space will be used. Selecting previously unselected package sbuild-build-depends-core-dummy. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10666 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-core-dummy.deb ... Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ... Setting up sbuild-build-depends-core-dummy (0.invalid.0) ... W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, init, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), libboost-regex-dev, libboost-iostreams-dev, libboost-filesystem-dev, libterm-readkey-perl, libtext-wrapper-perl, libcrypto++-dev, libpstreams-dev, libopenmpi-dev W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot dpkg-deb: building package `sbuild-build-depends-murasaki-dummy' in `/?BUILDDIR?/resolver-ZJAlNW/apt_archive/sbuild-build-depends-murasaki-dummy.deb'. W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot OK W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Reading package lists... +------------------------------------------------------------------------------+ ? Install murasaki build dependencies (apt-based resolver) ? +------------------------------------------------------------------------------+ Installing build dependencies W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Reading package lists... Building dependency tree... Reading state information... The following extra packages will be installed: adduser bsdmainutils debhelper file gcc-5-base gettext gettext-base groff-base icu-devtools intltool-debian libasprintf0c2 libboost-filesystem-dev libboost-filesystem1.55-dev libboost-filesystem1.55.0 libboost-iostreams-dev libboost-iostreams1.55-dev libboost-iostreams1.55.0 libboost-regex-dev libboost-regex1.55-dev libboost-regex1.55.0 libboost-system1.55-dev libboost-system1.55.0 libboost1.55-dev libcroco3 libcrypto++-dev libcrypto++9 libffi6 libgfortran3 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu52 libltdl-dev libltdl7 libmagic1 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libpipeline1 libpstreams-dev libterm-readkey-perl libtext-wrapper-perl libunistring0 libxml2 man-db openmpi-common perl perl-base perl-modules po-debconf Suggested packages: liblocale-gettext-perl wamerican wordlist whois vacation dh-make gettext-doc groff libboost1.55-doc libboost-atomic1.55-dev libboost-chrono1.55-dev libboost-context1.55-dev libboost-coroutine1.55-dev libboost-date-time1.55-dev libboost-exception1.55-dev libboost-graph1.55-dev libboost-graph-parallel1.55-dev libboost-locale1.55-dev libboost-log1.55-dev libboost-math1.55-dev libboost-mpi1.55-dev libboost-mpi-python1.55-dev libboost-program-options1.55-dev libboost-python1.55-dev libboost-random1.55-dev libboost-serialization1.55-dev libboost-signals1.55-dev libboost-test1.55-dev libboost-thread1.55-dev libboost-timer1.55-dev libboost-wave1.55-dev libboost1.55-tools-dev libmpfrc++-dev libntl-dev libhwloc-contrib-plugins icu-doc libtool-doc less www-browser perl-doc libterm-readline-gnu-perl libterm-readline-perl-perl libb-lint-perl libcpanplus-dist-build-perl libcpanplus-perl libfile-checktree-perl liblog-message-simple-perl liblog-message-perl libobject-accessor-perl libmail-box-perl Recommended packages: curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev libglib2.0-data shared-mime-info xdg-user-dirs libhwloc-plugins libtool xml-core netbase rename libarchive-extract-perl libmodule-pluggable-perl libpod-latex-perl libterm-ui-perl libtext-soundex-perl libcgi-pm-perl libmodule-build-perl libpackage-constants-perl libmail-sendmail-perl The following NEW packages will be installed: adduser bsdmainutils debhelper file gcc-5-base gettext gettext-base groff-base icu-devtools intltool-debian libasprintf0c2 libboost-filesystem-dev libboost-filesystem1.55-dev libboost-filesystem1.55.0 libboost-iostreams-dev libboost-iostreams1.55-dev libboost-iostreams1.55.0 libboost-regex-dev libboost-regex1.55-dev libboost-regex1.55.0 libboost-system1.55-dev libboost-system1.55.0 libboost1.55-dev libcroco3 libcrypto++-dev libcrypto++9 libffi6 libgfortran3 libglib2.0-0 libhwloc-dev libhwloc5 libibverbs-dev libibverbs1 libicu-dev libicu52 libltdl-dev libltdl7 libmagic1 libnuma-dev libnuma1 libopenmpi-dev libopenmpi1.6 libpipeline1 libpstreams-dev libterm-readkey-perl libtext-wrapper-perl libunistring0 libxml2 man-db openmpi-common po-debconf sbuild-build-depends-murasaki-dummy The following packages will be upgraded: perl perl-base perl-modules 3 upgraded, 52 newly installed, 0 to remove and 70 not upgraded. Need to get 43.1 MB/43.1 MB of archives. After this operation, 228 MB of additional disk space will be used. Get:1 http://debian.netcologne.de/debian/ unstable/main perl mipsel 5.20.2-6 [2090 kB] Get:2 http://debian.netcologne.de/debian/ unstable/main perl-base mipsel 5.20.2-6 [1118 kB] Get:3 http://debian.netcologne.de/debian/ unstable/main perl-modules all 5.20.2-6 [2540 kB] Get:4 http://debian.netcologne.de/debian/ unstable/main libboost-iostreams1.55.0 mipsel 1.55.0+dfsg-3 [46.9 kB] Get:5 http://debian.netcologne.de/debian/ unstable/main libpipeline1 mipsel 1.4.0-1 [26.6 kB] Get:6 http://debian.netcologne.de/debian/ unstable/main groff-base mipsel 1.22.3-1 [1218 kB] Get:7 http://debian.netcologne.de/debian/ unstable/main bsdmainutils mipsel 9.0.6 [184 kB] Get:8 http://debian.netcologne.de/debian/ unstable/main man-db mipsel 2.7.0.2-5 [984 kB] Get:9 http://debian.netcologne.de/debian/ unstable/main libasprintf0c2 mipsel 0.19.4-1 [31.7 kB] Get:10 http://debian.netcologne.de/debian/ unstable/main libmagic1 mipsel 1:5.22+15-2 [249 kB] Get:11 http://debian.netcologne.de/debian/ unstable/main libicu52 mipsel 52.1-9 [6691 kB] Get:12 http://debian.netcologne.de/debian/ unstable/main libxml2 mipsel 2.9.2+dfsg1-3 [815 kB] Get:13 http://debian.netcologne.de/debian/ unstable/main libboost-system1.55.0 mipsel 1.55.0+dfsg-3 [30.2 kB] Get:14 http://debian.netcologne.de/debian/ unstable/main libboost-filesystem1.55.0 mipsel 1.55.0+dfsg-3 [55.3 kB] Get:15 http://debian.netcologne.de/debian/ unstable/main libboost-regex1.55.0 mipsel 1.55.0+dfsg-3 [248 kB] Get:16 http://debian.netcologne.de/debian/ unstable/main libffi6 mipsel 3.1-2+b2 [18.4 kB] Get:17 http://debian.netcologne.de/debian/ unstable/main libglib2.0-0 mipsel 2.44.1-1 [2293 kB] Get:18 http://debian.netcologne.de/debian/ unstable/main libcroco3 mipsel 0.6.8-3+b1 [119 kB] Get:19 http://debian.netcologne.de/debian/ unstable/main gcc-5-base mipsel 5.1.1-11 [165 kB] Get:20 http://debian.netcologne.de/debian/ unstable/main libgfortran3 mipsel 5.1.1-11 [170 kB] Get:21 http://debian.netcologne.de/debian/ unstable/main libltdl7 mipsel 2.4.2-1.11 [42.8 kB] Get:22 http://debian.netcologne.de/debian/ unstable/main libnuma1 mipsel 2.0.10-1 [29.9 kB] Get:23 http://debian.netcologne.de/debian/ unstable/main libunistring0 mipsel 0.9.3-5.2+b1 [257 kB] Get:24 http://debian.netcologne.de/debian/ unstable/main libhwloc5 mipsel 1.11.0-1 [70.5 kB] Get:25 http://debian.netcologne.de/debian/ unstable/main adduser all 3.113+nmu3 [264 kB] Get:26 http://debian.netcologne.de/debian/ unstable/main file mipsel 1:5.22+15-2 [60.1 kB] Get:27 http://debian.netcologne.de/debian/ unstable/main gettext-base mipsel 0.19.4-1 [121 kB] Get:28 http://debian.netcologne.de/debian/ unstable/main gettext mipsel 0.19.4-1 [1189 kB] Get:29 http://debian.netcologne.de/debian/ unstable/main intltool-debian all 0.35.0+20060710.2 [25.9 kB] Get:30 http://debian.netcologne.de/debian/ unstable/main po-debconf all 1.0.18 [248 kB] Get:31 http://debian.netcologne.de/debian/ unstable/main debhelper all 9.20150507 [824 kB] Get:32 http://debian.netcologne.de/debian/ unstable/main icu-devtools mipsel 52.1-9 [167 kB] Get:33 http://debian.netcologne.de/debian/ unstable/main libboost1.55-dev mipsel 1.55.0+dfsg-3 [5813 kB] Get:34 http://debian.netcologne.de/debian/ unstable/main libboost-system1.55-dev mipsel 1.55.0+dfsg-3 [32.4 kB] Get:35 http://debian.netcologne.de/debian/ unstable/main libboost-filesystem1.55-dev mipsel 1.55.0+dfsg-3 [69.7 kB] Get:36 http://debian.netcologne.de/debian/ unstable/main libboost-filesystem-dev mipsel 1.55.0.2 [3046 B] Get:37 http://debian.netcologne.de/debian/ unstable/main libicu-dev mipsel 52.1-9 [7700 kB] Get:38 http://debian.netcologne.de/debian/ unstable/main libboost-regex1.55-dev mipsel 1.55.0+dfsg-3 [335 kB] Get:39 http://debian.netcologne.de/debian/ unstable/main libboost-iostreams1.55-dev mipsel 1.55.0+dfsg-3 [57.9 kB] Get:40 http://debian.netcologne.de/debian/ unstable/main libboost-iostreams-dev mipsel 1.55.0.2 [3012 B] Get:41 http://debian.netcologne.de/debian/ unstable/main libboost-regex-dev mipsel 1.55.0.2 [3284 B] Get:42 http://debian.netcologne.de/debian/ unstable/main libcrypto++9 mipsel 5.6.1-6 [1314 kB] Get:43 http://debian.netcologne.de/debian/ unstable/main libcrypto++-dev mipsel 5.6.1-6 [3032 kB] Get:44 http://debian.netcologne.de/debian/ unstable/main libltdl-dev mipsel 2.4.2-1.11 [158 kB] Get:45 http://debian.netcologne.de/debian/ unstable/main libpstreams-dev all 0.8.0-2 [125 kB] Get:46 http://debian.netcologne.de/debian/ unstable/main libterm-readkey-perl mipsel 2.32-2 [26.1 kB] Get:47 http://debian.netcologne.de/debian/ unstable/main libtext-wrapper-perl all 1.05-1 [11.6 kB] Get:48 http://debian.netcologne.de/debian/ unstable/main libnuma-dev mipsel 2.0.10-1 [45.9 kB] Get:49 http://debian.netcologne.de/debian/ unstable/main libhwloc-dev mipsel 1.11.0-1 [141 kB] Get:50 http://debian.netcologne.de/debian/ unstable/main libibverbs1 mipsel 1.1.8-1.1 [30.4 kB] Get:51 http://debian.netcologne.de/debian/ unstable/main libibverbs-dev mipsel 1.1.8-1.1 [86.7 kB] Get:52 http://debian.netcologne.de/debian/ unstable/main libopenmpi1.6 mipsel 1.6.5-9.2 [1141 kB] Get:53 http://debian.netcologne.de/debian/ unstable/main openmpi-common all 1.6.5-9.2 [110 kB] Get:54 http://debian.netcologne.de/debian/ unstable/main libopenmpi-dev mipsel 1.6.5-9.2 [448 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 43.1 MB in 9s (4679 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10666 files and directories currently installed.) Preparing to unpack .../perl_5.20.2-6_mipsel.deb ... Unpacking perl (5.20.2-6) over (5.20.2-1) ... Preparing to unpack .../perl-base_5.20.2-6_mipsel.deb ... Unpacking perl-base (5.20.2-6) over (5.20.2-1) ... Setting up perl-base (5.20.2-6) ... (Reading database ... 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Preparing to unpack .../libibverbs-dev_1.1.8-1.1_mipsel.deb ... Unpacking libibverbs-dev (1.1.8-1.1) ... Selecting previously unselected package libopenmpi1.6. Preparing to unpack .../libopenmpi1.6_1.6.5-9.2_mipsel.deb ... Unpacking libopenmpi1.6 (1.6.5-9.2) ... Selecting previously unselected package openmpi-common. Preparing to unpack .../openmpi-common_1.6.5-9.2_all.deb ... Unpacking openmpi-common (1.6.5-9.2) ... Selecting previously unselected package libopenmpi-dev. Preparing to unpack .../libopenmpi-dev_1.6.5-9.2_mipsel.deb ... Unpacking libopenmpi-dev (1.6.5-9.2) ... Selecting previously unselected package sbuild-build-depends-murasaki-dummy. Preparing to unpack .../sbuild-build-depends-murasaki-dummy.deb ... Unpacking sbuild-build-depends-murasaki-dummy (0.invalid.0) ... Setting up perl-modules (5.20.2-6) ... Setting up perl (5.20.2-6) ... Setting up libboost-iostreams1.55.0:mipsel (1.55.0+dfsg-3) ... Setting up libpipeline1:mipsel (1.4.0-1) ... Setting up groff-base (1.22.3-1) ... Setting up bsdmainutils (9.0.6) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up man-db (2.7.0.2-5) ... Not building database; man-db/auto-update is not 'true'. Setting up libasprintf0c2:mipsel (0.19.4-1) ... Setting up libmagic1:mipsel (1:5.22+15-2) ... Setting up libicu52:mipsel (52.1-9) ... Setting up libxml2:mipsel (2.9.2+dfsg1-3) ... Setting up libboost-system1.55.0:mipsel (1.55.0+dfsg-3) ... Setting up libboost-filesystem1.55.0:mipsel (1.55.0+dfsg-3) ... Setting up libboost-regex1.55.0:mipsel (1.55.0+dfsg-3) ... Setting up libffi6:mipsel (3.1-2+b2) ... Setting up libglib2.0-0:mipsel (2.44.1-1) ... No schema files found: doing nothing. Setting up libcroco3:mipsel (0.6.8-3+b1) ... Setting up gcc-5-base:mipsel (5.1.1-11) ... Setting up libgfortran3:mipsel (5.1.1-11) ... Setting up libltdl7:mipsel (2.4.2-1.11) ... Setting up libnuma1:mipsel (2.0.10-1) ... Setting up libunistring0:mipsel (0.9.3-5.2+b1) ... Setting up libhwloc5:mipsel (1.11.0-1) ... Setting up adduser (3.113+nmu3) ... Setting up file (1:5.22+15-2) ... Setting up gettext-base (0.19.4-1) ... Setting up gettext (0.19.4-1) ... Setting up intltool-debian (0.35.0+20060710.2) ... Setting up po-debconf (1.0.18) ... Setting up debhelper (9.20150507) ... Setting up icu-devtools (52.1-9) ... Setting up libboost1.55-dev:mipsel (1.55.0+dfsg-3) ... Setting up libboost-system1.55-dev:mipsel (1.55.0+dfsg-3) ... Setting up libboost-filesystem1.55-dev:mipsel (1.55.0+dfsg-3) ... Setting up libboost-filesystem-dev:mipsel (1.55.0.2) ... Setting up libicu-dev:mipsel (52.1-9) ... Setting up libboost-regex1.55-dev:mipsel (1.55.0+dfsg-3) ... Setting up libboost-iostreams1.55-dev:mipsel (1.55.0+dfsg-3) ... Setting up libboost-iostreams-dev:mipsel (1.55.0.2) ... Setting up libboost-regex-dev:mipsel (1.55.0.2) ... Setting up libcrypto++9 (5.6.1-6) ... Setting up libcrypto++-dev (5.6.1-6) ... Setting up libltdl-dev:mipsel (2.4.2-1.11) ... Setting up libpstreams-dev (0.8.0-2) ... Setting up libterm-readkey-perl (2.32-2) ... Setting up libtext-wrapper-perl (1.05-1) ... Setting up libnuma-dev:mipsel (2.0.10-1) ... Setting up libhwloc-dev:mipsel (1.11.0-1) ... Setting up libibverbs1 (1.1.8-1.1) ... Setting up libibverbs-dev (1.1.8-1.1) ... Setting up libopenmpi1.6 (1.6.5-9.2) ... Setting up openmpi-common (1.6.5-9.2) ... Setting up libopenmpi-dev (1.6.5-9.2) ... update-alternatives: using /usr/lib/openmpi/include to provide /usr/include/mpi (mpi) in auto mode Setting up sbuild-build-depends-murasaki-dummy (0.invalid.0) ... Processing triggers for libc-bin (2.19-15) ... W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot +------------------------------------------------------------------------------+ ? Build environment ? +------------------------------------------------------------------------------+ Kernel: Linux 3.16.0-0.bpo.4-loongson-3 mipsel (mips64) Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.24 g++-4.9_4.9.2-10 gcc-4.9_4.9.2-10 libc6-dev_2.19-15 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 linux-libc-dev_3.16.7-ckt4-3 Package versions: adduser_3.113+nmu3 apt_1.0.9.7 base-files_8 base-passwd_3.5.37 bash_4.3-12 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-5 build-essential_11.7 bzip2_1.0.6-7+b2 coreutils_8.23-3 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10 dash_0.5.7-4+b1 debconf_1.5.55 debfoster_2.7-2 debhelper_9.20150507 debian-archive-keyring_2014.3 debianutils_4.4+b1 diffutils_1:3.3-1+b1 dpkg_1.17.24 dpkg-dev_1.17.24 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9+b1 g++_4:4.9.2-2 g++-4.9_4.9.2-10 gcc_4:4.9.2-2 gcc-4.9_4.9.2-10 gcc-4.9-base_4.9.2-10 gcc-5-base_5.1.1-11 gettext_0.19.4-1 gettext-base_0.19.4-1 gnupg_1.4.18-6 gpgv_1.4.18-6 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 icu-devtools_52.1-9 init_1.22 initscripts_2.88dsf-58 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.7 libasprintf0c2_0.19.4-1 libatomic1_4.9.2-10 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1+b1 libblkid1_2.2 5.2-5 libboost-filesystem-dev_1.55.0.2 libboost-filesystem1.55-dev_1.55.0+dfsg-3 libboost-filesystem1.55.0_1.55.0+dfsg-3 libboost-iostreams-dev_1.55.0.2 libboost-iostreams1.55-dev_1.55.0+dfsg-3 libboost-iostreams1.55.0_1.55.0+dfsg-3 libboost-regex-dev_1.55.0.2 libboost-regex1.55-dev_1.55.0+dfsg-3 libboost-regex1.55.0_1.55.0+dfsg-3 libboost-system1.55-dev_1.55.0+dfsg-3 libboost-system1.55.0_1.55.0+dfsg-3 libboost1.55-dev_1.55.0+dfsg-3 libbz2-1.0_1.0.6-7+b2 libc-bin_2.19-15 libc-dev-bin_2.19-15 libc6_2.19-15 libc6-dev_2.19-15 libcap2_1:2.24-6 libcloog-isl4_0.18.2-1+b2 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3+b1 libcrypto++-dev_5.6.1-6 libcrypto++9_5.6.1-6 libdb5.3_5.3.28-9 libdebconfclient0_0.192 libdpkg-perl_1.17.24 libfakeroot_1.20.2-1 libffi6_3.1-2+b2 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10 libgcc1_1:4.9.2-10 libgcrypt20_1.6.2-4+b1 libgdbm3_1.8.3-13.1 libgfortran3_5.1.1-11 libglib2.0-0_2.44.1-1 libgmp10_2:6.0.0+dfsg-6 libgomp1_4.9.2-10 libgpg-error0_1.17-3 libhwloc-dev_1.11.0-1 libhwloc5_1.11.0-1 libibverbs-dev_1.1.8-1.1 libibverbs1_1.1.8-1.1 libicu-dev_52.1-9 libicu52_52.1-9 libisl10_0.12.2-2 libltdl-dev_2.4.2-1.11 libltdl7_2.4.2-1.11 liblzma5_5.1.1alpha+20120614-2+b3 libmagic1_1:5.22+15-2 libmount1_2.25.2-5 libmpc3_1.0.3-1 libmpfr4_3.1.2-3 libncurses5_5.9+20140913-1+b1 libnuma-dev_2.0.10-1 libnuma1_2.0.10-1 libopenmpi-dev_1.6.5-9.2 libopenmpi1.6_1.6.5-9.2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-3.3 libpipeline1_1.4.0-1 libpstreams-dev_0.8.0-2 libreadline6_6.3-8+b3 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1+b1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-5 libss2_1.42.12-1.1 libstdc++-4.9-dev_4.9.2-10 libstdc++6_4.9.2-10 libsystemd0_215-12 libterm-readkey-perl_2.32-2 libtext-wrapper-perl_1.05-1 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1+b1 libunistring0_0.9.3-5.2+b1 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3+b2 libuuid1_2.25.2-5 libxml2_2.9. 2+dfsg1-3 linux-libc-dev_3.16.7-ckt4-3 login_1:4.2-3 lsb-base_4.1+Debian13+nmu1 make_4.0-8.1 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-5 multiarch-support_2.19-15 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20140913-1+b1 openmpi-common_1.6.5-9.2 passwd_1:4.2-3 patch_2.7.4-2 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 po-debconf_1.0.18 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-murasaki-dummy_0.invalid.0 sed_4.2.2-4+b1 sensible-utils_0.0.9 startpar_0.59-3 sudo_1.8.12-1 sysv-rc_2.88dsf-58 sysvinit-core_2.88dsf-58 sysvinit-utils_2.88dsf-58 tar_1.27.1-2+b1 tzdata_2015a-1 util-linux_2.25.2-5 xz-utils_5.1.1alpha+20120614-2+b3 zlib1g_1:1.2.8.dfsg-2+b1 +------------------------------------------------------------------------------+ ? Build ? +------------------------------------------------------------------------------+ Unpack source ------------- W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error gpgv: Signature made Thu Apr 16 12:06:40 2015 UTC using RSA key ID D1C646D1 gpgv: Can't check signature: public key not found dpkg-source: warning: failed to verify signature on ./murasaki_1.68.6-1.dsc dpkg-source: info: extracting murasaki in murasaki-1.68.6 dpkg-source: info: unpacking murasaki_1.68.6.orig.tar.gz dpkg-source: info: unpacking murasaki_1.68.6-1.debian.tar.xz dpkg-source: info: applying use_proper_libboost_names.patch dpkg-source: info: applying include_libpstream.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying man_syntax.patch W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Check disc space ---------------- Sufficient free space for build W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot User Environment ---------------- W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot DEB_BUILD_OPTIONS=parallel=5 HOME=/sbuild-nonexistent LOGNAME=buildd PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=sid-mipsel-sbuild SCHROOT_CHROOT_NAME=sid-mipsel-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1009 SCHROOT_GROUP=buildd SCHROOT_SESSION_ID=sid-mipsel-sbuild-4a4978e5-063f-4ea4-add2-46ac86e5f19f SCHROOT_UID=2952 SCHROOT_USER=buildd SHELL=/bin/sh USER=buildd dpkg-buildpackage ----------------- W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot dpkg-buildpackage: source package murasaki dpkg-buildpackage: source version 1.68.6-1 dpkg-buildpackage: source distribution unstable dpkg-source --before-build murasaki-1.68.6 dpkg-buildpackage: host architecture mipsel fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean make -j1 clean make[1]: Entering directory '/?PKGBUILDDIR?' rm -rf *.o *~ .*~ core make -C src clean make[2]: Entering directory '/?PKGBUILDDIR?/src' rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa make[2]: Leaving directory '/?PKGBUILDDIR?/src' make[1]: Leaving directory '/?PKGBUILDDIR?' dh_clean debian/rules build-arch dh build-arch dh_testdir -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/?PKGBUILDDIR?' dh_auto_build -- USE_MPI=YES make -j1 USE_MPI=YES make[2]: Entering directory '/?PKGBUILDDIR?' make -C src all make[3]: Entering directory '/?PKGBUILDDIR?/src' mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki.cc murasaki.cc: In function 'void procLocs(LocList&, std::list<Location>&, int, int)': murasaki.cc:1008:8: warning: variable 'revZero' set but not used [-Wunused-but-set-variable] bool revZero=false; ^ mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c timing.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c dinkymath.cc dinkymath.cc: In function 'std::string littleEndianStr(unsigned int, int)': dinkymath.cc:40:7: warning: variable 'last' set but not used [-Wunused-but-set-variable] int last=0; ^ dinkymath.cc: In function 'std::string littleEndianPat(unsigned int, int)': dinkymath.cc:53:7: warning: variable 'last' set but not used [-Wunused-but-set-variable] int last=0; ^ mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c sequence.cc sequence.cc: In member function 'std::pair<double, long int> IntervalSet::entropy() const': sequence.cc:3330:10: warning: variable 'shortest' set but not used [-Wunused-but-set-variable] SeqPos shortest=0,shortlen=length(spaces[0]); ^ mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c msethash.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c options.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecohash.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecolist.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki_mpi.cc murasaki_mpi.cc: In function 'void mpi_hasher_client_mode(BitSequence*)': murasaki_mpi.cc:561:9: warning: variable 'send_done' set but not used [-Wunused-but-set-variable] int send_done; ^ mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c arrayhash.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c seqread.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c scoring.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c openhash.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c genopts.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c binseq.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-image.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr.cc cgr.cc: In member function 'void Cgr::merge(Cgr&)': cgr.cc:140:7: warning: variable 'redist' set but not used [-Wunused-but-set-variable] int redist=(unsigned long)(rez*rez)<=seedcount; ^ cgr.cc: In member function 'bool Cgr::savePNG(std::string)': cgr.cc:288:7: warning: variable 'res' set but not used [-Wunused-but-set-variable] int res; ^ cgr.cc: In member function 'int PgmBuffer::loadPGM(std::string)': cgr.cc:435:7: warning: variable 'wordwidth' set but not used [-Wunused-but-set-variable] int wordwidth=1; ^ cgr.cc: In member function 'int PgmBuffer::loadBinaryPGM(std::string)': cgr.cc:551:36: warning: 'maxval' may be used uninitialized in this function [-Wmaybe-uninitialized] default: data.back()*=(maxout/maxval);break;//ugly, but it'll work ^ cgr.cc:557:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized] if(data.size()<(uint)(height*width)) ^ cgr.cc:557:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized] cgr.cc: In member function 'int PgmBuffer::loadPGM(std::string)': cgr.cc:485:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized] if(data.size()<(uint)(height*width)) ^ cgr.cc:485:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized] mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-compare.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-random.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-sample.cc cgr-sample.cc: In function 'int main(int, char**)': cgr-sample.cc:54:8: warning: variable 'repeatmask' set but not used [-Wunused-but-set-variable] bool repeatmask=false,save=false; ^ mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c testeco.cc testeco.cc:42:3: warning: this decimal constant is unsigned only in ISO C90 const long genomesize=3221225472; ^ testeco.cc: In function 'long int bigrand()': testeco.cc:29:43: warning: left shift count >= width of type return (long)(((unsigned long)(rand())<<32) + ((unsigned long)(rand()))); ^ mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../testeco testeco.o ecolist.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-compare.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c alignments.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-or.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-or align-or.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c geneparse.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../geneparse geneparse.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-and.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-and align-and.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-best.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-best align-best.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-coverage.cc align-coverage.cc: In function 'int main(int, char**)': align-coverage.cc:148:10: warning: variable 'seqStats' set but not used [-Wunused-but-set-variable] bool seqStats=true; ^ mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c getsegments.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../getsegments getsegments.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c mbfa.cc mpicxx -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DMURASAKI_MPI -DUSE_SHM_SYSV -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread make[3]: Leaving directory '/?PKGBUILDDIR?/src' make[2]: Leaving directory '/?PKGBUILDDIR?' for bin in geneparse mbfa murasaki cgr-* testeco align-* ; do \ mv ${bin} ${bin}-mpi ; \ done make clean make[2]: Entering directory '/?PKGBUILDDIR?' rm -rf *.o *~ .*~ core make -C src clean make[3]: Entering directory '/?PKGBUILDDIR?/src' rm -rf *.o *~ .*~ core ../murasaki ../cgr-image ../cgr-compare ../cgr-random ../cgr-sample ../testeco ../align-compare ../align-or ../geneparse ../align-and ../align-best ../align-coverage ../getsegments ../mbfa make[3]: Leaving directory '/?PKGBUILDDIR?/src' make[2]: Leaving directory '/?PKGBUILDDIR?' dh_auto_build -- USE_MPI=NO make -j1 USE_MPI=NO make[2]: Entering directory '/?PKGBUILDDIR?' make -C src all make[3]: Entering directory '/?PKGBUILDDIR?/src' g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki.cc murasaki.cc: In function 'void procLocs(LocList&, std::list<Location>&, int, int)': murasaki.cc:1008:8: warning: variable 'revZero' set but not used [-Wunused-but-set-variable] bool revZero=false; ^ g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c timing.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c dinkymath.cc dinkymath.cc: In function 'std::string littleEndianStr(unsigned int, int)': dinkymath.cc:40:7: warning: variable 'last' set but not used [-Wunused-but-set-variable] int last=0; ^ dinkymath.cc: In function 'std::string littleEndianPat(unsigned int, int)': dinkymath.cc:53:7: warning: variable 'last' set but not used [-Wunused-but-set-variable] int last=0; ^ g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c sequence.cc sequence.cc: In member function 'std::pair<double, long int> IntervalSet::entropy() const': sequence.cc:3330:10: warning: variable 'shortest' set but not used [-Wunused-but-set-variable] SeqPos shortest=0,shortlen=length(spaces[0]); ^ g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c msethash.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c options.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecohash.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c ecolist.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c murasaki_mpi.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c arrayhash.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c seqread.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c scoring.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c openhash.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c genopts.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c binseq.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../murasaki murasaki.o timing.o dinkymath.o sequence.o msethash.o options.o ecohash.o ecolist.o murasaki_mpi.o arrayhash.o seqread.o scoring.o openhash.o genopts.o binseq.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-image.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr.cc cgr.cc: In member function 'void Cgr::merge(Cgr&)': cgr.cc:140:7: warning: variable 'redist' set but not used [-Wunused-but-set-variable] int redist=(unsigned long)(rez*rez)<=seedcount; ^ cgr.cc: In member function 'bool Cgr::savePNG(std::string)': cgr.cc:288:7: warning: variable 'res' set but not used [-Wunused-but-set-variable] int res; ^ cgr.cc: In member function 'int PgmBuffer::loadPGM(std::string)': cgr.cc:435:7: warning: variable 'wordwidth' set but not used [-Wunused-but-set-variable] int wordwidth=1; ^ cgr.cc: In member function 'int PgmBuffer::loadBinaryPGM(std::string)': cgr.cc:551:36: warning: 'maxval' may be used uninitialized in this function [-Wmaybe-uninitialized] default: data.back()*=(maxout/maxval);break;//ugly, but it'll work ^ cgr.cc:557:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized] if(data.size()<(uint)(height*width)) ^ cgr.cc:557:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized] cgr.cc: In member function 'int PgmBuffer::loadPGM(std::string)': cgr.cc:485:31: warning: 'height' may be used uninitialized in this function [-Wmaybe-uninitialized] if(data.size()<(uint)(height*width)) ^ cgr.cc:485:31: warning: 'width' may be used uninitialized in this function [-Wmaybe-uninitialized] g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-image cgr-image.o cgr.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-compare.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-compare cgr-compare.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-random.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-random cgr-random.o cgr.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c cgr-sample.cc cgr-sample.cc: In function 'int main(int, char**)': cgr-sample.cc:54:8: warning: variable 'repeatmask' set but not used [-Wunused-but-set-variable] bool repeatmask=false,save=false; ^ g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../cgr-sample cgr.o cgr-sample.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c testeco.cc testeco.cc:42:3: warning: this decimal constant is unsigned only in ISO C90 const long genomesize=3221225472; ^ testeco.cc: In function 'long int bigrand()': testeco.cc:29:43: warning: left shift count >= width of type return (long)(((unsigned long)(rand())<<32) + ((unsigned long)(rand()))); ^ g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../testeco testeco.o ecolist.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-compare.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c alignments.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-compare align-compare.o dinkymath.o alignments.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-or.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-or align-or.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c geneparse.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../geneparse geneparse.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-and.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-and align-and.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-best.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-best align-best.o alignments.o dinkymath.o timing.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c align-coverage.cc align-coverage.cc: In function 'int main(int, char**)': align-coverage.cc:148:10: warning: variable 'seqStats' set but not used [-Wunused-but-set-variable] bool seqStats=true; ^ g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../align-coverage align-coverage.o alignments.o dinkymath.o timing.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c getsegments.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../getsegments getsegments.o seqread.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -c mbfa.cc g++ -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -g -I/usr/include/pstreams -Wall -DLARGESEQ_SUPPORT -DUSE_LIBCRYPTOPP -fno-strict-aliasing -o ../mbfa mbfa.o dinkymath.o timing.o seqread.o binseq.o genopts.o -lboost_regex -lboost_filesystem -lboost_iostreams -lboost_system -Wl,-z,relro -lcryptopp -pthread make[3]: Leaving directory '/?PKGBUILDDIR?/src' make[2]: Leaving directory '/?PKGBUILDDIR?' make[1]: Leaving directory '/?PKGBUILDDIR?' dh_auto_test -a fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/?PKGBUILDDIR?' dh_install # using wildcards in install files is practical but it duplicates some files find debian/murasaki/usr -name "*-mpi" -delete make[1]: Leaving directory '/?PKGBUILDDIR?' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/?PKGBUILDDIR?' dh_installman # create manpages for PL files mkdir -p debian/murasaki-common/usr/share/man/man1 for pscript in debian/murasaki-common/usr/lib/debian-med/bin/* ; do \ pod2man ${pscript} > debian/murasaki-common/usr/share/man/man1/`basename ${pscript}`.1 ; \ done Can't open debian/murasaki-common/usr/lib/debian-med/bin/*: No such file or directory at /usr/bin/pod2man line 71. make[1]: *** [override_dh_installman] Error 2 debian/rules:24: recipe for target 'override_dh_installman' failed make[1]: Leaving directory '/?PKGBUILDDIR?' make: *** [binary-arch] Error 2 debian/rules:13: recipe for target 'binary-arch' failed dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit status 2 -------------------------------------------------------------------------------- Build finished at 20150622-1619 Finished -------- E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ ? Cleanup ? +------------------------------------------------------------------------------+ Purging /?BUILDDIR? W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot Not cleaning session: cloned chroot in use W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot W: line 16 [wheezy-backports-sloppy-mipsel-sbuild] aliases: Alias ?stable-backports-mipsel-sbuild? already associated with ?unknown? chroot +------------------------------------------------------------------------------+ ? Summary ? +------------------------------------------------------------------------------+ Build Architecture: mipsel Build-Space: 162944 Build-Time: 2278 Distribution: sid Fail-Stage: build Host Architecture: mipsel Install-Time: 94 Job: murasaki_1.68.6-1 Machine Architecture: mipsel Package: murasaki Package-Time: 2471 Source-Version: 1.68.6-1 Space: 162944 Status: attempted Version: 1.68.6-1 -------------------------------------------------------------------------------- Finished at 20150622-1619 Build needed 00:41:11, 162944k disc space