Dear James and Andrew, I am writing to kindly bring the following Staden build issue to your attention. The Debian automated build system is currently unable to build the code from source due to multiple declarations of identically named functions with different parameter and return types. We were wondering if you could help out there -- many thanks in advance!
Best wishes Sascha -- Forwarded email below -- Date: Sat, 1 Aug 2015 07:28:32 +0200 From: Andreas Tille <andr...@fam-tille.de> To: "Chris West (Faux)" <solo-debianb...@goeswhere.com>, 793...@bugs.debian.org, James Bonfield <j...@sanger.ac.uk> Cc: Tim Booth <tbo...@ceh.ac.uk> Subject: Re: Bug#793514: FTBFS: conflicting types for append_int Hi Staden developers, as you can see in this Debian bug report the current staden release is in conflict with the latest releases of staden-io-lib. Both dafine the same function but with different code (not only the header is different). Any help is welcome Andreas. On Fri, Jul 24, 2015 at 07:14:29PM +0000, Chris West (Faux) wrote: > Source: staden > Version: 2.0.0+b10-1.1 > Severity: serious > Tags: sid > Justification: fails to build from source > User: reproducible-bui...@lists.alioth.debian.org > Usertags: ftbfs > > Dear Maintainer, > > The package fails to build: > > sam_index.c:321:14: error: conflicting types for ‘append_int’ > static char *append_int(char *cp, int i) { > ^ > In file included from /usr/include/io_lib/scram.h:52:0, > from sam_pileup.h:4, > from sam_index.c:17: > /usr/include/io_lib/bam.h:755:16: note: previous declaration of ‘append_int’ > was here > unsigned char *append_int(unsigned char *cp, int32_t i); > ^ > /staden-2.0.0+b10/./gap5/../global.mk:388: recipe for target 'sam_index.o' > failed > make[2]: *** [sam_index.o] Error 1 > make[2]: Leaving directory '/staden-2.0.0+b10/gap5' > > > Full build log: > https://reproducible.debian.net/rb-pkg/unstable/amd64/staden.html > > -- System Information: > Debian Release: stretch/sid > APT prefers unstable > APT policy: (500, 'unstable') > Architecture: amd64 (x86_64) > > Kernel: Linux 3.19.0-23-generic (SMP w/8 CPU cores) > Locale: LANG=en_GB.UTF-8, LC_CTYPE=en_GB.UTF-8 (charmap=UTF-8) > Shell: /bin/sh linked to /bin/dash > Init: systemd (via /run/systemd/system) > > _______________________________________________ > Debian-med-packaging mailing list > debian-med-packag...@lists.alioth.debian.org > http://lists.alioth.debian.org/cgi-bin/mailman/listinfo/debian-med-packaging -- http://fam-tille.de ----- End forwarded message ----- -- http://fam-tille.de -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. -- To UNSUBSCRIBE, email to debian-bugs-rc-requ...@lists.debian.org with a subject of "unsubscribe". Trouble? Contact listmas...@lists.debian.org