Your message dated Mon, 21 Dec 2015 00:22:07 +0000
with message-id <e1aaoep-0005rb...@franck.debian.org>
and subject line Bug#807979: fixed in bamtools 2.4.0+dfsg-3
has caused the Debian Bug report #807979,
regarding bamtools cannot open bam files on big endian systems
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
807979: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=807979
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: bamtools
Version: 2.4.0+dfsg-2
Severity: grave
This bug affects big endian systems (mips, powerpc, ...) . It is not
possible to handle bam files.
Here is a quick test case:
$ bamtools count -in test.bam
bamtools count ERROR: could not open input BAM file(s)... Aborting.
I filed a bug report upstream with a detailed explanation.
https://github.com/pezmaster31/bamtools/issues/113
Best
-Dominique
--- End Message ---
--- Begin Message ---
Source: bamtools
Source-Version: 2.4.0+dfsg-3
We believe that the bug you reported is fixed in the latest version of
bamtools, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 807...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dominique Belhachemi <domi...@debian.org> (supplier of updated bamtools package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Sun, 20 Dec 2015 15:41:42 -0500
Source: bamtools
Binary: bamtools libbamtools-dev libbamtools2.4.0
Architecture: source amd64
Version: 2.4.0+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Dominique Belhachemi <domi...@debian.org>
Description:
bamtools - toolkit for manipulating BAM (genome alignment) files
libbamtools-dev - C++ API for manipulating BAM (genome alignment) files
libbamtools2.4.0 - dynamic library for manipulating BAM (genome alignment)
files
Closes: 807979
Changes:
bamtools (2.4.0+dfsg-3) unstable; urgency=medium
.
* allow to read bam files on big endian systems (Closes: #807979)
* added sam_spec_example.sam and sam_spec_example.bam files
* activated cmake testing framework abd added simple tests
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Files:
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