On 16 February 2016 at 07:40, Dirk Eddelbuettel wrote:
|
| On 15 February 2016 at 13:20, Chris Lamb wrote:
| | Source: rjava
| | Version: 0.9-8-1
| | Severity: serious
| | Justification: fails to build from source
| | User: reproducible-bui...@lists.alioth.debian.org
| | Usertags: ftbfs
| | X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org
| |
| | Dear Maintainer,
| |
| | rjava fails to build from source in unstable/amd64:
| |
| | [..]
| |
| | checking whether setjmp.h is POSIX.1 compatible... yes
| | checking whether sigsetjmp is declared... yes
| | checking whether siglongjmp is declared... yes
| | checking Java support in R... present:
| | interpreter : '/usr/lib/jvm/default-java/jre/bin/java'
| | archiver : '/usr/lib/jvm/default-java/bin/jar'
| | compiler : '/usr/lib/jvm/default-java/bin/javac'
| | header prep.: '/usr/lib/jvm/default-java/bin/javah'
| | cpp flags : '-I/usr/lib/jvm/default-java/include'
| | java libs : '-L/usr/lib/jvm/default-java/jre/lib/amd64/server -ljvm'
| | checking whether Java run-time works... yes
| | checking whether -Xrs is supported... yes
| | checking whether JNI programs can be compiled... configure: error: Cannot
compile a simple JNI program. See config.log for details.
| |
| | Make sure you have Java Development Kit installed and correctly
registered in R.
| | If in doubt, re-run "R CMD javareconf" as root.
| |
| | ERROR: configuration failed for package 'rJava'
| | * removing
'/home/lamby/temp/cdt.20160215130417.8nrJupJ3Ai/rjava-0.9-8/debian/r-cran-rjava/usr/lib/R/site-library/rJava'
| | /usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed
| | make: *** [R_any_arch] Error 1
| |
| | [..]
| |
| | The full build log is attached.
|
| Could be a change in default-java. Here is me trying to install a given
| Java-using package from CRAN once r-cran-rjava has been loaded in a 'Debian
| unstable' container
|
| configure: checking whether gcc -std=gnu99 supports static inline...
| yes
| checking whether setjmp.h is POSIX.1 compatible... yes
| checking whether sigsetjmp is declared... yes
| checking whether siglongjmp is declared... yes
| checking Java support in R... present:
| interpreter : '/usr/lib/jvm/default-java/jre/bin/java'
| archiver : '/usr/lib/jvm/default-java/bin/jar'
| compiler : '/usr/lib/jvm/default-java/bin/javac'
| header prep.: '/usr/lib/jvm/default-java/bin/javah'
| cpp flags : '-I/usr/lib/jvm/default-java/include'
| java libs : '-L/usr/lib/jvm/default-java/jre/lib/amd64/server -ljvm'
| checking whether Java run-time works... ./configure: line 3736:
/usr/lib/jvm/default-java/jre/bin/java: No such file or directory
| no
| configure: error: Java interpreter '/usr/lib/jvm/default-java/jre/bin/java'
does not work
| ERROR: configuration failed for package 'rJava'
| * removing '/usr/local/lib/R/site-library/rJava'
|
| The downloaded source packages are in
| '/tmp/Rtmp8m9GKv/downloaded_packages'
| Warning message:
| In install.packages("rJava", repos = "http://cloud.r-project.org";) :
| installation of package 'rJava' had non-zero exit status
| >
|
| I'll take another look later.
Could it be a recent change of default-jdk (which R itself build-depends
upon, as does the r-cran-rjava package breaking) from java7 to java8?
All this used to work, but as you notice, had a sudden breakage.
Everything still works if we install 'openjdk-7-jdk' -- but that should not
be necessary.
Shall I just add a Build-Depends: on 'openjdk-7-jdk | openjdk-8-jdk' ? Seems
like a kludge. Better ideas?
Dirk
|
| Dirk
| |
| |
| | Regards,
| |
| | --
| | ,''`.
| | : :' : Chris Lamb
| | `. `'` la...@debian.org / chris-lamb.co.uk
| | `-
| | x[DELETED ATTACHMENT rjava.0.9-8-1.unstable.amd64.log.txt.gz, Untyped
binary data]
|
| --
| http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
|
--
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
