Your message dated Mon, 25 Apr 2016 22:29:49 +0000 with message-id <e1aup0n-0004fe...@franck.debian.org> and subject line Bug#822474: fixed in mira 4.9.5-6 has caused the Debian Bug report #822474, regarding mira: FTBFS: error: 'accumulate' is not a member of 'std' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 822474: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=822474 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: mira Version: 4.9.5-5 Severity: serious This package fails to build in unstable: > sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux ... > g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" > -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" > -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" > -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 > -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 > -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 > -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 > -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict > -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 > -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 > -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ > -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ > -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ > -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 > -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time > -D_FORTIFY_SOURCE=2 -D > PUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat > -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread > -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type > -Werror=parentheses -Werror=unused-value -std=c++14 -c -o parameters.o > parameters.C > read.C: In member function 'void Read::dumpAsReadname(std::ostream&)': > read.C:1262:33: warning: format '%x' expects argument of type 'unsigned int', > but argument 3 has type 'Read*' [-Wformat=] > sprintf(buffer, "%x", this) ; > ^ > read.C: In member function 'void Read::dumpAsFASTA(std::ostream&, bool, bool, > bool)': > read.C:1293:33: warning: format '%x' expects argument of type 'unsigned int', > but argument 3 has type 'Read*' [-Wformat=] > sprintf(buffer, "%x", this) ; > ^ > read.C: In member function 'void Read::dumpAsFASTQ(std::ostream&, bool, bool, > bool)': > read.C:1377:33: warning: format '%x' expects argument of type 'unsigned int', > but argument 3 has type 'Read*' [-Wformat=] > sprintf(buffer, "%x", this) ; > ^ > read.C: In member function 'void Read::dumpAsFASTAQual(std::ostream&, bool, > bool, bool)': > read.C:1478:33: warning: format '%x' expects argument of type 'unsigned int', > but argument 3 has type 'Read*' [-Wformat=] > sprintf(buffer, "%x", this) ; > ^ > read.C: In member function 'void Read::dumpAsCAF(std::ostream&)': > read.C:1550:33: warning: format '%x' expects argument of type 'unsigned int', > but argument 3 has type 'Read*' [-Wformat=] > sprintf(buffer, "%x", this) ; > ^ > read.C: In member function 'void Read::dumpAsMAF(std::ostream&)': > read.C:1968:33: warning: format '%x' expects argument of type 'unsigned int', > but argument 3 has type 'Read*' [-Wformat=] > sprintf(buffer, "%x", this) ; > ^ > contig_consensus.C: In member function 'void > Contig::makeIntelligentConsensus(std::__cxx11::string&, std::vector<unsigned > char>&, std::vector<int>*, int32, int32, int32, int32, base_quality_t, char, > bool, bool, bool)': > contig_consensus.C:2144:22: error: 'accumulate' is not a member of 'std' > auto > sumcounts=std::accumulate(countsofpossiblebases.begin(),countsofpossiblebases.end(),0); > ^ > g++ -DPACKAGE_NAME=\"mira\" -DPACKAGE_TARNAME=\"mira\" > -DPACKAGE_VERSION=\"4.9.5_2\" -DPACKAGE_STRING=\"mira\ 4.9.5_2\" > -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"mira\" > -DVERSION=\"4.9.5_2\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 > -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 > -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 > -DENABLE64=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DYYTEXT_POINTER=1 > -DSTDC_HEADERS=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -Drestrict=__restrict > -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_STDLIB_H=1 -DHAVE_REALLOC=1 > -DLSTAT_FOLLOWS_SLASHED_SYMLINK=1 -DHAVE_STRFTIME=1 -DHAVE_MEMSET=1 > -DHAVE_FSEEKO=1 -DHAVE_ISBLANK=1 -DHAVE_BOOST=/\*\*/ > -DHAVE_BOOST_THREAD=/\*\*/ -DHAVE_BOOST_REGEX=/\*\*/ > -DHAVE_BOOST_SYSTEM=/\*\*/ -DHAVE_BOOST_FILESYSTEM=/\*\*/ > -DHAVE_BOOST_IOSTREAMS=/\*\*/ -DHAVE_LIBRT=1 -DHAVE_GZOFFSET=1 > -DBOUNDTRACKFLAG=1 -DBUGTRACKFLAG=1 -I. -I../../src -Wdate-time > -D_FORTIFY_SOURCE=2 -D > PUBLICQUIET -DAJ_Linux64 -g -O2 -fstack-protector-strong -Wformat > -Werror=format-security -I/usr/include -O3 -funroll-loops -pthread > -I/usr/include -I/usr/include -Werror=uninitialized -Werror=return-type > -Werror=parentheses -Werror=unused-value -std=c++14 -c -o pcrcontainer.o > pcrcontainer.C > Makefile:632: recipe for target 'contig_consensus.o' failed > make[7]: *** [contig_consensus.o] Error 1 -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
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--- Begin Message ---Source: mira Source-Version: 4.9.5-6 We believe that the bug you reported is fixed in the latest version of mira, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 822...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated mira package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 25 Apr 2016 23:48:55 +0200 Source: mira Binary: mira-assembler mira-examples mira-doc Architecture: source Version: 4.9.5-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: mira-assembler - Whole Genome Shotgun and EST Sequence Assembler mira-doc - documentation for the mira assembler mira-examples - files to experiment with the mira assembler Closes: 822474 Changes: mira (4.9.5-6) unstable; urgency=medium . * Fix build issue with gcc-6 Closes: #822474 Checksums-Sha1: 6ecda39421e131404cb0b68bcb7b9cb28ea351fa 2464 mira_4.9.5-6.dsc f481220fff6c3917e95e1e2c0c6519f8ce6b1326 19820 mira_4.9.5-6.debian.tar.xz Checksums-Sha256: 2e7ad83d3f30f2b8513c5d82393828cbe81762dd61e28004ea2ec92187ad44df 2464 mira_4.9.5-6.dsc 168a40e60a1d1eb2ab8856d1900c81d96c4c30c94ec79715e0302a70609afeeb 19820 mira_4.9.5-6.debian.tar.xz Files: c5ac2764829d8f1a3e050cd2a5248cfb 2464 science optional mira_4.9.5-6.dsc 89a049798e61f6a5c864826c333edb8d 19820 science optional mira_4.9.5-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXHpJ/AAoJEFeKBJTRxkbRr84P/2nIdbQ09djxCP8gdVBOV6ez it0x8yHJgmIJ96ilq6QJMY5wFsFBaYEzbraEp4sYdeQShgEx5uOrAAKgmDmak/gf lZH7J6pqgzsvklkoE9HktvO50B0PPNWonOjdMFy93xUFjTXfUfbaZHcACuLSwUhS Y5rLagcd407FlA77vxawg10Y6lWv2r2Elgqbc/ELGYFtcznGT6wdj6QMjt3y8E7T cNedyPdsXholxAxgQot4M2mIjZYSLe6xPXWncYgbS3xfqbiZnaEw8O8vcYO2a+Re XK356t2XJKRQHd8rfGUw1tLgWdlbLa6Dt1FLvZFl/gwSkTGelvvSxms8RaqgTHSB yXoq/AnJk3WeuePOt5T3agcunrjVyBUwZdvxG4SR1Swo6mrMRnNfdGsMxFTd7Hbj enx5D19tGMjQ/HD2454+/2KZx5LmO5foDzf5NB6qtVneaBMkqv7vwW0fnPYFnRn6 5oE3B0PJdrMg+Y1gTfeaJvwmRXtJazPdsv2pfFZr2k+Pti9RrysCVyo0LoY+yYvY icJhhe7LHzkD5VMmuT/bdIF5cX9O7kXmE5VdI1WfLhOUBvt/IGSuq8eXbaCXOkPa SOM3jEbYElIvBOvmtygzgKsLa/NMheOAshGp+YuweILnoPc9ymvEnqg7iFZcrX8K Kh2oddYGVzZ0B0Siw0gm =wySz -----END PGP SIGNATURE-----
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