Your message dated Sun, 08 May 2016 12:19:24 +0000 with message-id <e1azngc-0008vq...@franck.debian.org> and subject line Bug#822701: fixed in samtools 1.3.1-2 has caused the Debian Bug report #822701, regarding samtools 1.3 fails to build against htslib 1.3.1. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 822701: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=822701 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: samtools Version: 1.3-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-bui...@lists.alioth.debian.org Dear Maintainer, samtools fails to build from source in unstable/amd64: [..] Generate CRAM file #2 .. ok Generating test data file .................. done Generate BAM file #3 .. ok Generate CRAM file #3 .. ok Generating test data file .................. done Generate BAM file #4 .. ok Generate CRAM file #4 .. ok 1: cat BAM files .. ok 2: cat recompressed BAM files .. ok 3: cat CRAM files .. ok 4: cat BAM files to stdout .. ok 5: cat recompressed BAM files to stdout .. ok 6: cat CRAM files to stdout .. ok 7: cat BAM files with new header .. ok 8: cat recompressed BAM files with new header .. ok 9: cat CRAM files with new header .. ok test_bam2fq: Generate BAM file .. ok Generate CRAM file .. ok 1: fastq (SAM input) [M::bam2fq_mainloop] processed 36 reads .. ok 2: fastq -n (SAM input) [M::bam2fq_mainloop] processed 36 reads .. ok 3: fastq (BAM input) [M::bam2fq_mainloop] processed 36 reads .. ok 4: fastq -n (BAM input) [M::bam2fq_mainloop] processed 36 reads .. ok 5: fastq (CRAM input) [M::bam2fq_mainloop] processed 36 reads .. ok 6: fastq -n (CRAM input) [M::bam2fq_mainloop] processed 36 reads .. ok test_bam2fq: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fastq -1 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/1.fq -2 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/2.fq /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/bam2fq.001.sam .. ok test_bam2fq: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fastq -s /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/s.fq -1 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/1.fq -2 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/2.fq /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/bam2fq.001.sam .. ok test_bam2fq: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fastq -s /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/s.fq -1 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/1.fq -2 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/2.fq /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/bam2fq.002.sam .. ok test_bam2fq: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fastq -s /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/s.fq -1 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/1.fq -2 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/2.fq /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/bam2fq.003.sam .. ok test_depad: Generate BAM file .. ok depad (SAM input) .. ok depad -s (SAM input) .. ok depad -u (SAM input) .. ok depad -1 (SAM input) .. ok depad (BAM input) .. ok depad -s (BAM input) .. ok depad -u (BAM input) .. ok depad -1 (BAM input) .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/1_map_cigar.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/2_equal_cigar_full_seq.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/3_map_cigar_equal_seq.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/4_X_cigar_full_seq.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/5_insert_cigar.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa -i 0 /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/5_insert_cigar.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/7_supp.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/8_secondary.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -S RG -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/1_map_cigar.sam | tail -n+4 .. ok test_stats: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools stats -S RG -r /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/test.fa /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/stat/10_map_cigar.sam | tail -n+4 .. ok test_merge: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools merge -s 1 - /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_b.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_c.sam .. ok test_merge: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools merge -s 1 - /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.bam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_b.bam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_c.bam .. ok test_merge: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools merge -s 1 -b /tmp/FjwTLcIMVX - /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.bam .. ok test_merge: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools merge -s 1 - /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_b.bam .. ok test_merge: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools merge -r -s 1 - /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_b.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_c.sam .. ok test_merge: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools merge -cp -s 1 - /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_b.sam .. ok test_merge: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools merge -s 1 - /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a_regex.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_b_regex.sam .. ok test_sort: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools sort /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.bam /tmp/wocveQgKUk/sortout .. ok test_sort: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools sort -f /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.bam /tmp/wocveQgKUk/sortout.bam .. ok test_sort: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools sort -o /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.bam /tmp/wocveQgKUk/sorttmp .. ok test_fixmate: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fixmate -O sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/fixmate/1_coord_sort.sam - ERR: [bam_mating_core] ERROR: Coordinate sorted, require grouped/sorted by queryname. .. expected failure test_fixmate: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fixmate -O sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/fixmate/2_isize_overflow.sam - .. ok test_fixmate: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fixmate -O sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/fixmate/3_reverse_read_pp_lt.sam - .. ok test_fixmate: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fixmate -O sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/fixmate/4_reverse_read_pp_equal.sam - .. ok test_fixmate: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fixmate -cO sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/fixmate/5_ct.sam - .. ok test_fixmate: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools fixmate -cO sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/fixmate/6_ct_replace.sam - .. ok /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools calmd -uAr /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/mpileup.1.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/mpileup.ref.fa .. ok test_idxstat: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools idxstats /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/test_input_1_a.bam .. ok test_quickcheck: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools quickcheck /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/1.quickcheck.badeof.bam .. ok test_quickcheck: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools quickcheck /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/2.quickcheck.badheader.bam .. ok test_quickcheck: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools quickcheck /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/3.quickcheck.ok.bam .. ok test_quickcheck: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools quickcheck /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/4.quickcheck.ok.bam .. ok test_quickcheck: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools quickcheck -v /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/1.quickcheck.badeof.bam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/2.quickcheck.badheader.bam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/3.quickcheck.ok.bam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/quickcheck/4.quickcheck.ok.bam | sed 's,.*/quickcheck/,,' .. ok test_reheader: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools reheader /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/reheader/hdr.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/view.001.tmp.bam | /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools view -h | perl -pe 's/ VN:.*//' .. ok test_reheader: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools reheader /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/reheader/hdr.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/view.001.tmp.v21.cram | /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools view -h | perl -pe 's/ VN:.*//' .. ok test_reheader: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools reheader /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/reheader/hdr.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/view.001.tmp.v30.cram | /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools view -h | perl -pe 's/ VN:.*//' .. ok test_reheader: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools reheader --in-place /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/reheader/hdr.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/view.001.tmp.v21.cram && /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools view -h /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/view.001.tmp.v21.cram | perl -pe 's/ VN:.*//' .. ok test_reheader: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools reheader --in-place /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/reheader/hdr.sam /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/view.001.tmp.v30.cram && /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools view -h /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/dat/view.001.tmp.v30.cram | perl -pe 's/ VN:.*//' .. ok test_addrprg: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools addreplacerg -O sam -m overwrite_all /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/addrprg/1_fixup.sam .. ok test_addrprg: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools addreplacerg -O sam -m orphan_only /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/addrprg/2_fixup_orphan.sam .. ok test_addrprg: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools addreplacerg -O sam -R '1#7' /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/addrprg/1_fixup.sam .. ok test_addrprg: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools addreplacerg -O sam -r '@RG\tID:1#8\tCN:SC' /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/addrprg/4_fixup_norg.sam .. ok test_addrprg: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools addreplacerg -O sam -m overwrite_all -R '1#8' /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/addrprg/1_fixup.sam .. ok test_addrprg: /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/samtools addreplacerg -O sam -r 'ID:1#8' -r 'CN:SC' /home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3/test/addrprg/4_fixup_norg.sam .. ok Number of tests: total .. 416 passed .. 398 failed .. 0 expected failure .. 18 unexpected pass .. 0 test/merge/test_bam_translate test/merge/test_bam_translate.tmp test/merge/test_rtrans_build test/merge/test_trans_tbl_init cd test/mpileup && ./regression.sh mpileup.reg === Testing mpileup.reg regressions === UNEXPECTED PASS: Task worked when we expected failure; when running $samtools mpileup -x -d 8500 -B -f mpileup.ref.fa deep.sam|awk '{print $4}' See PASS-47.out.1 vs expected/47.out Expected passes: 123 Unexpected passes: 1 Expected failures: 0 Unexpected failures: 0 => FAIL Makefile:201: recipe for target 'test' failed make[2]: *** [test] Error 1 make[2]: Leaving directory '/home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3' dh_auto_test: make -j9 test VERBOSE=1 BGZIP=/usr/bin/bgzip returned exit code 2 debian/rules:25: recipe for target 'override_dh_auto_test' failed make[1]: *** [override_dh_auto_test] Error 2 make[1]: Leaving directory '/home/lamby/temp/cdt.20160426185936.tgPyaYKRDx.samtools/samtools-1.3' debian/rules:6: recipe for target 'build' failed make: *** [build] Error 2 [..] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
samtools.1.3-1.unstable.amd64.log.txt.gz
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--- Begin Message ---Source: samtools Source-Version: 1.3.1-2 We believe that the bug you reported is fixed in the latest version of samtools, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 822...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Charles Plessy <ple...@debian.org> (supplier of updated samtools package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sun, 08 May 2016 21:11:12 +0900 Source: samtools Binary: samtools samtools-test Architecture: source Version: 1.3.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Charles Plessy <ple...@debian.org> Description: samtools - processing sequence alignments in SAM and BAM formats samtools-test - test files for the samtools package Closes: 822701 Changes: samtools (1.3.1-2) unstable; urgency=medium . 952da10 Build-depends on htslib 1.3.1. (Closes: #822701) Checksums-Sha1: a2ff20435a0000b232164b5a21b334dfe5974316 2166 samtools_1.3.1-2.dsc e7da64c8924e00adec7ce485b77a7884e894192d 11932 samtools_1.3.1-2.debian.tar.xz Checksums-Sha256: 9685c19919910f9c0ea658af290b0ddd1316ea54e2576687a2515096af86d182 2166 samtools_1.3.1-2.dsc 22071259e5a5aeacc2cce14c43c2de5cb1f82755ed1ad1f64c094b09013fb6b3 11932 samtools_1.3.1-2.debian.tar.xz Files: 002bd04cff0c35c3938aed15ac48606c 2166 science optional samtools_1.3.1-2.dsc 71c6099d5e9bd6bd0620c56b7a8728af 11932 science optional samtools_1.3.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCgAGBQJXLy1iAAoJEMW9bI8ildUCdawQAJdUqYi+QcBfYQ7MZMZjU5SU 5XUhR2EPHU6ciOqG0lxsTVlB0YalLoW3kbsq1SzTnbZiI1jxClkA86KqLJS2Zqft yhc9U9aZD+G3mIxrU87S51TH9ewC5eB8qeZXIk6aCi2k81p9Fo0EZqg3a3u4UR/A TqQL4/hXHRVruWz4YOZhrsXDRgRZ5hxkKTnXtnn/nDoxnsKEPvKOcUiAfy9aAT3n og7wyZB1u3s2/PyqqC7oFOIiBJ77WK+jGtFbvPu5vnVrrmVVWNX5OC3g/Gfys8av 1EzaAoWmy7YFvphhnsqVVUIt6JrRPrjhr+gR+pYA6n3zYxrnXSefTgT5GtmmHO6c Q9DdEi1yJKRMD5FEdpst5JYXjvJH7PL973S6haLXEAVsdvsL2xzHmfIzEOrjHdUf OztBJ7fQRvpSvhSU8UNmbjBM9bfC1K35Aex376r8+6wD5fAQ0ND+WPEK7WzIFMPv SL+c0ArVFVDWYAf/+VeDkG567aXmJkj2M9am6ks0VxElWklmg4QRJgom6d2d2Cxx qUTNgSVrFbkgBfBK10Hvm9TDSS322coxfFWaFfGq3u1coAMBtZyWKBcbOp2dzFy6 w4IDXIJiIACS6xnmy5gJhV1eyOin4zrYPFJmu5Jjw5reSbay67vZ1xr/ohMyfArR rlPKD1V2SPX0R07G467G =ALJt -----END PGP SIGNATURE-----
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