Your message dated Sun, 03 Jul 2016 13:50:29 +0000 with message-id <e1bjhn3-00034n...@franck.debian.org> and subject line Bug#811657: fixed in libbpp-core 2.2.0-3 has caused the Debian Bug report #811657, regarding FTBFS with GCC 6: cannot convert x to y to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 811657: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811657 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: libbpp-core Version: 2.1.0-1 Severity: important User: debian-...@lists.debian.org Usertags: ftbfs-gcc-6 gcc-6-cannot-convert This package fails to build with GCC 6. GCC 6 has not been released yet, but it's expected that GCC 6 will become the default compiler for stretch. Note that only the first error is reported; there might be more. You can find a snapshot of GCC 6 in experimental. To build with GCC 6, you can set CC=gcc-6 CXX=g++-6 explicitly. > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux ... > [ 1%] Building CXX object > src/CMakeFiles/bppcore-shared.dir/Bpp/App/ApplicationTools.cpp.o > In file included from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45:0, > from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.cpp:41: > /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:172:16: warning: > 'template<class> class std::auto_ptr' is deprecated > [-Wdeprecated-declarations] > mutable std::auto_ptr<std::ostream> stream_; > ^~~~~~~~ > > In file included from /usr/include/c++/6/memory:81:0, > from /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:50, > from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45, > from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.cpp:41: > /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ > > [ 2%] Building CXX object > src/CMakeFiles/bppcore-shared.dir/Bpp/App/BppApplication.cpp.o > In file included from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45:0, > from /<<PKGBUILDDIR>>/src/Bpp/App/BppApplication.cpp:42: > /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:172:16: warning: > 'template<class> class std::auto_ptr' is deprecated > [-Wdeprecated-declarations] > mutable std::auto_ptr<std::ostream> stream_; > ^~~~~~~~ > > In file included from /usr/include/c++/6/memory:81:0, > from /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:50, > from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45, > from /<<PKGBUILDDIR>>/src/Bpp/App/BppApplication.cpp:42: > /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ > > [ 2%] Building CXX object > src/CMakeFiles/bppcore-shared.dir/Bpp/App/NumCalcApplicationTools.cpp.o > In file included from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45:0, > from > /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.h:44, > from > /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.cpp:40: > /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:172:16: warning: > 'template<class> class std::auto_ptr' is deprecated > [-Wdeprecated-declarations] > mutable std::auto_ptr<std::ostream> stream_; > ^~~~~~~~ > > In file included from /usr/include/c++/6/memory:81:0, > from /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:50, > from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45, > from > /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.h:44, > from > /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.cpp:40: > /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here > template<typename> class auto_ptr; > ^~~~~~~~ > > [ 3%] Building CXX object > src/CMakeFiles/bppcore-shared.dir/Bpp/Io/FileTools.cpp.o > /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp: In static member function 'static > bool bpp::FileTools::fileExists(const string&)': > /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp:57:15: error: cannot convert > 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in initialization > bool test = file; > ^~~~ > > /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp: In static member function 'static > bool bpp::FileTools::directoryExists(const string&)': > /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp:67:15: error: cannot convert > 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in initialization > bool test = file; > ^~~~ > > src/CMakeFiles/bppcore-shared.dir/build.make:182: recipe for target > 'src/CMakeFiles/bppcore-shared.dir/Bpp/Io/FileTools.cpp.o' failed > make[3]: *** [src/CMakeFiles/bppcore-shared.dir/Bpp/Io/FileTools.cpp.o] Error > 1 > make[3]: Leaving directory '/<<PKGBUILDDIR>>' -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
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--- Begin Message ---Source: libbpp-core Source-Version: 2.2.0-3 We believe that the bug you reported is fixed in the latest version of libbpp-core, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 811...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Gert Wollny <gw.foss...@gmail.com> (supplier of updated libbpp-core package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Thu, 09 Jun 2016 15:50:20 +0200 Source: libbpp-core Binary: libbpp-core-dev libbpp-core2v5 Architecture: source Version: 2.2.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Gert Wollny <gw.foss...@gmail.com> Description: libbpp-core-dev - Bio++ Core library development files libbpp-core2v5 - Bio++ Core library Closes: 811657 Changes: libbpp-core (2.2.0-3) unstable; urgency=medium . * Team upload [ Andreas Tille ] * d/postrm: remove useless ldconfig call * hardening=+bindnow . [ Gert Wollny ] * d/p/gcc-6.patch: fix compilation with g++-6, Closes: #811657 * cme fix dpkg-control * d/p/unforce..: Do not force CXX flags from CMake file Checksums-Sha1: dfac1dd938f51652e3825617245ca3dcf5193c23 2095 libbpp-core_2.2.0-3.dsc 412a266a7b38a26302a36ba7653a1e6c7eb12268 4996 libbpp-core_2.2.0-3.debian.tar.xz Checksums-Sha256: e3b46e42205be5492bb1fa6242f75efd685b6f4e1fceee03c604780206c7478b 2095 libbpp-core_2.2.0-3.dsc 6527cdf7b1dd3385f3ff1a8048caccf11447b736f6ac819d37bf9fa8e1e52243 4996 libbpp-core_2.2.0-3.debian.tar.xz Files: 9ec484b1ec086803a592346029e7adeb 2095 science optional libbpp-core_2.2.0-3.dsc 6eff01f2f29dd3dd3d225f56ad832c95 4996 science optional libbpp-core_2.2.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCAAGBQJXeRRsAAoJEFeKBJTRxkbRDnkP/iEvDOtKxFQybkj5s/cClFhk s+hwmfYr/7CD0gXP4cGqStV231ju5gekBBa58y5qKlSuhFF4lwX/xrhr0DXe/HZK Mv1gJCHP417L5BiO9qbN8eJrPvQxg2d8iME6KAlp8AD211IVsjIdG3FQgtFmxjpP MT6xY3SUtJpNOEvRn2/22JJFJKaWba/Ma15bT/cd1e/B+QIEMpBqtudVmcs+vVo9 IoYknZMUu9Sb+BVGIv+H2rAd6p/nqrctGy3gRkmWROarixewxqSY2J5ZqKk7VqgZ webYd9wE49ZKLKxDPGfkCHhpWQKCVhP47+L97LPJcuWa6nknjwDEhXcGxXyIoAb7 zq4izG9asM5x4qHAth7HF13y80iEoZ5J8/y83HDiuiv4D3mdLMcjFt/LTw6mNWW3 6bvHueJIFnpNGF1vTqttgLw7Xdcov9JXmv0upb392lE2gO39VddP8Ukxf/4NEbgy gD+/Tk2JOLARyfH/hVDsrPjSLSHRgf23iDcBoIAty6icXQ3zIkh58cP1FPvR+S5O PkeJlva20KP0TyDIaOYWaRkLfBZLXMFXK6CBHBNy2o/r5EpyM6Spy9eQwCehk1zi FFKTof8xqocfeeassCYG+1JDTab61CM3BS3Q7VQRNAJKqh9z/RFuyFWXgQbwvyMW qi+f5zD4LACPWJZTYd6p =xko3 -----END PGP SIGNATURE-----
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