Your message dated Sun, 03 Jul 2016 13:50:29 +0000
with message-id <e1bjhn3-00034n...@franck.debian.org>
and subject line Bug#811657: fixed in libbpp-core 2.2.0-3
has caused the Debian Bug report #811657,
regarding FTBFS with GCC 6: cannot convert x to y
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)


-- 
811657: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811657
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: libbpp-core
Version: 2.1.0-1
Severity: important
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-6 gcc-6-cannot-convert

This package fails to build with GCC 6.  GCC 6 has not been released
yet, but it's expected that GCC 6 will become the default compiler for
stretch.

Note that only the first error is reported; there might be more.  You
can find a snapshot of GCC 6 in experimental.  To build with GCC 6,
you can set CC=gcc-6 CXX=g++-6 explicitly.

> sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux
...
> [  1%] Building CXX object 
> src/CMakeFiles/bppcore-shared.dir/Bpp/App/ApplicationTools.cpp.o
> In file included from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45:0,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.cpp:41:
> /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:172:16: warning: 
> 'template<class> class std::auto_ptr' is deprecated 
> [-Wdeprecated-declarations]
>    mutable std::auto_ptr<std::ostream> stream_;
>                 ^~~~~~~~
> 
> In file included from /usr/include/c++/6/memory:81:0,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:50,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.cpp:41:
> /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
>    template<typename> class auto_ptr;
>                             ^~~~~~~~
> 
> [  2%] Building CXX object 
> src/CMakeFiles/bppcore-shared.dir/Bpp/App/BppApplication.cpp.o
> In file included from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45:0,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/BppApplication.cpp:42:
> /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:172:16: warning: 
> 'template<class> class std::auto_ptr' is deprecated 
> [-Wdeprecated-declarations]
>    mutable std::auto_ptr<std::ostream> stream_;
>                 ^~~~~~~~
> 
> In file included from /usr/include/c++/6/memory:81:0,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:50,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/BppApplication.cpp:42:
> /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
>    template<typename> class auto_ptr;
>                             ^~~~~~~~
> 
> [  2%] Building CXX object 
> src/CMakeFiles/bppcore-shared.dir/Bpp/App/NumCalcApplicationTools.cpp.o
> In file included from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45:0,
>                  from 
> /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.h:44,
>                  from 
> /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.cpp:40:
> /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:172:16: warning: 
> 'template<class> class std::auto_ptr' is deprecated 
> [-Wdeprecated-declarations]
>    mutable std::auto_ptr<std::ostream> stream_;
>                 ^~~~~~~~
> 
> In file included from /usr/include/c++/6/memory:81:0,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/../Io/OutputStream.h:50,
>                  from /<<PKGBUILDDIR>>/src/Bpp/App/ApplicationTools.h:45,
>                  from 
> /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.h:44,
>                  from 
> /<<PKGBUILDDIR>>/src/Bpp/App/NumCalcApplicationTools.cpp:40:
> /usr/include/c++/6/bits/unique_ptr.h:49:28: note: declared here
>    template<typename> class auto_ptr;
>                             ^~~~~~~~
> 
> [  3%] Building CXX object 
> src/CMakeFiles/bppcore-shared.dir/Bpp/Io/FileTools.cpp.o
> /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp: In static member function 'static 
> bool bpp::FileTools::fileExists(const string&)':
> /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp:57:15: error: cannot convert 
> 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in initialization
>    bool test = file;
>                ^~~~
> 
> /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp: In static member function 'static 
> bool bpp::FileTools::directoryExists(const string&)':
> /<<PKGBUILDDIR>>/src/Bpp/Io/FileTools.cpp:67:15: error: cannot convert 
> 'std::ifstream {aka std::basic_ifstream<char>}' to 'bool' in initialization
>    bool test = file;
>                ^~~~
> 
> src/CMakeFiles/bppcore-shared.dir/build.make:182: recipe for target 
> 'src/CMakeFiles/bppcore-shared.dir/Bpp/Io/FileTools.cpp.o' failed
> make[3]: *** [src/CMakeFiles/bppcore-shared.dir/Bpp/Io/FileTools.cpp.o] Error 
> 1
> make[3]: Leaving directory '/<<PKGBUILDDIR>>'

-- 
Martin Michlmayr
Linux for HPE Helion, Hewlett Packard Enterprise

--- End Message ---
--- Begin Message ---
Source: libbpp-core
Source-Version: 2.2.0-3

We believe that the bug you reported is fixed in the latest version of
libbpp-core, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 811...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Gert Wollny <gw.foss...@gmail.com> (supplier of updated libbpp-core package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 1.8
Date: Thu, 09 Jun 2016 15:50:20 +0200
Source: libbpp-core
Binary: libbpp-core-dev libbpp-core2v5
Architecture: source
Version: 2.2.0-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team 
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Gert Wollny <gw.foss...@gmail.com>
Description:
 libbpp-core-dev - Bio++ Core library development files
 libbpp-core2v5 - Bio++ Core library
Closes: 811657
Changes:
 libbpp-core (2.2.0-3) unstable; urgency=medium
 .
   * Team upload
   [ Andreas Tille ]
   * d/postrm: remove useless ldconfig call
   * hardening=+bindnow
 .
   [ Gert Wollny ]
   * d/p/gcc-6.patch: fix compilation with g++-6, Closes: #811657
   * cme fix dpkg-control
   * d/p/unforce..: Do not force CXX flags from CMake file
Checksums-Sha1:
 dfac1dd938f51652e3825617245ca3dcf5193c23 2095 libbpp-core_2.2.0-3.dsc
 412a266a7b38a26302a36ba7653a1e6c7eb12268 4996 libbpp-core_2.2.0-3.debian.tar.xz
Checksums-Sha256:
 e3b46e42205be5492bb1fa6242f75efd685b6f4e1fceee03c604780206c7478b 2095 
libbpp-core_2.2.0-3.dsc
 6527cdf7b1dd3385f3ff1a8048caccf11447b736f6ac819d37bf9fa8e1e52243 4996 
libbpp-core_2.2.0-3.debian.tar.xz
Files:
 9ec484b1ec086803a592346029e7adeb 2095 science optional libbpp-core_2.2.0-3.dsc
 6eff01f2f29dd3dd3d225f56ad832c95 4996 science optional 
libbpp-core_2.2.0-3.debian.tar.xz

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--- End Message ---

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