Your message dated Sat, 16 Jul 2016 16:15:39 +0000 with message-id <e1bosff-0003mw...@franck.debian.org> and subject line Bug#818812: fixed in madness 0.10-7 has caused the Debian Bug report #818812, regarding madness: FTBFS with libc 2.23: 'isnan' was not declared in this scope to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 818812: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=818812 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: madness Version: 0.10-6 Severity: important User: debian-gl...@lists.debian.org Usertags: 2.23 This package fails to build with libc6 2.23 (2.23-0experimental0 from experimental). > sbuild (Debian sbuild) 0.68.0 (15 Jan 2016) on dl580gen9-02.hlinux ... > mpicxx -DHAVE_CONFIG_H -I../../../src -I../../../src -I../../../src/apps > -DMRA_CHEMDATA_DIR=\"/<<PKGBUILDDIR>>/src/apps/chem\" -Wdate-time > -D_FORTIFY_SOURCE=2 -DMPICH_SKIP_MPICXX=1 -DOMPI_SKIP_MPICXX=1 -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -O3 > -Wall -Wno-strict-aliasing -Wno-deprecated -Wno-unused-local-typedefs -c -o > plotxc.o plotxc.cc > xcfunctional_ldaonly.cc: In member function 'madness::Tensor<double> > madness::XCfunctional::exc(const std::vector<madness::Tensor<double> >&, int) > const': > xcfunctional_ldaonly.cc:103:27: error: 'isnan' was not declared in this scope > if (isnan(f[i])) throw "numerical error in lda functional"; > ^ > xcfunctional_ldaonly.cc:103:27: note: suggested alternative: > In file included from /usr/include/c++/5/random:38:0, > from /usr/include/c++/5/bits/stl_algo.h:66, > from /usr/include/c++/5/algorithm:62, > from ../../../src/madness/world/dqueue.h:42, > from ../../../src/madness/world/thread.h:41, > from ../../../src/madness/misc/ran.h:36, > from ../../../src/madness/tensor/tensor.h:36, > from ../../../src/apps/chem/xcfunctional.h:10, > from xcfunctional_ldaonly.cc:5: > /usr/include/c++/5/cmath:641:5: note: 'std::isnan' > isnan(_Tp __x) > ^ > xcfunctional_ldaonly.cc:114:27: error: 'isnan' was not declared in this scope > if (isnan(f[i])) throw "numerical error in lda functional"; > ^ > xcfunctional_ldaonly.cc:114:27: note: suggested alternative: > In file included from /usr/include/c++/5/random:38:0, > from /usr/include/c++/5/bits/stl_algo.h:66, > from /usr/include/c++/5/algorithm:62, > from ../../../src/madness/world/dqueue.h:42, > from ../../../src/madness/world/thread.h:41, > from ../../../src/madness/misc/ran.h:36, > from ../../../src/madness/tensor/tensor.h:36, > from ../../../src/apps/chem/xcfunctional.h:10, > from xcfunctional_ldaonly.cc:5: > /usr/include/c++/5/cmath:641:5: note: 'std::isnan' > isnan(_Tp __x) > ^ > xcfunctional_ldaonly.cc: In member function 'madness::Tensor<double> > madness::XCfunctional::vxc(const std::vector<madness::Tensor<double> >&, int, > int) const': > xcfunctional_ldaonly.cc:139:27: error: 'isnan' was not declared in this scope > if (isnan(f[i])) throw "numerical error in lda functional"; > ^ > xcfunctional_ldaonly.cc:139:27: note: suggested alternative: > In file included from /usr/include/c++/5/random:38:0, > from /usr/include/c++/5/bits/stl_algo.h:66, > from /usr/include/c++/5/algorithm:62, > from ../../../src/madness/world/dqueue.h:42, > from ../../../src/madness/world/thread.h:41, > from ../../../src/madness/misc/ran.h:36, > from ../../../src/madness/tensor/tensor.h:36, > from ../../../src/apps/chem/xcfunctional.h:10, > from xcfunctional_ldaonly.cc:5: > /usr/include/c++/5/cmath:641:5: note: 'std::isnan' > isnan(_Tp __x) > ^ > xcfunctional_ldaonly.cc:151:27: error: 'isnan' was not declared in this scope > if (isnan(f[i])) throw "numerical error in lda functional"; ... -- Martin Michlmayr Linux for HPE Helion, Hewlett Packard Enterprise
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--- Begin Message ---Source: madness Source-Version: 0.10-7 We believe that the bug you reported is fixed in the latest version of madness, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 818...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Graham Inggs <gin...@debian.org> (supplier of updated madness package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 16 Jul 2016 14:03:33 +0200 Source: madness Binary: libmadness-dev Architecture: source Version: 0.10-7 Distribution: unstable Urgency: medium Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org> Changed-By: Graham Inggs <gin...@debian.org> Description: libmadness-dev - Numerical Environment for Scientific Simulation (development file Closes: 818812 Changes: madness (0.10-7) unstable; urgency=medium . * debian/patches/fix_glibc_2.23.patch: Cherrypick patch from upstream to use std::isnan from cmath and fix FTBFS, thanks Logan Rosen. (Closes: #818812) * debian/rules (OMPI_MCA): Replace obsolete orte_rsh_agent with plm_rsh_agent. * debian/rules (override_dh_auto_test): Disable tests on armel and i386. * debian/*: Fix various issues in copyright, unusual spacing in control, wrap-and-sort. * debian/control: Use secure URI for Vcs-Browser. * debian/control: Add myself to Uploaders. * debian/control: Bump Standards-Version to 3.9.8, no further changes. Checksums-Sha1: 32b4973637246c153828e9705d0601c69f9fbcc7 2035 madness_0.10-7.dsc 0c16f8d15d7710991303155fc1d661b1dd161235 7100 madness_0.10-7.debian.tar.xz Checksums-Sha256: 6c5e1813d7132c28c88b4dce9dbe6c85788f9db01d6e9e86d9251f39fa8dbdd5 2035 madness_0.10-7.dsc 6527ef334a99395f85a38d202b34270e3d14f6eaabdfa44971218d74775b32e0 7100 madness_0.10-7.debian.tar.xz Files: 81c01c512163dea63e489cb0f3d0311e 2035 libdevel optional madness_0.10-7.dsc 62fa21e118776cbf7bc1957ae22659d2 7100 libdevel optional madness_0.10-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCgAGBQJXikQzAAoJEK/P7I5mnOHCpsEQAKOFsdEGIDQI2TVsVQLchV+a Pmt2dxuwkkWIxW6jsVQ78TcSsoRwOgntdnbtaQov2Ops7AcQRtxZE69cO7USbk69 EBPTfaZDmHJ8k6a/adB3+/YUH8wMmX5Aa5UvXWZiCr2mBrDJmX5k4b2kgXrZlPPi YauV8oTLYnMCF+3Gr2lWXFgs/L2XcHBvowko+hAgav/sJaY4YyWgFPkyWFrJeu6V /k5QSqilqU2+rO0tzGF/5M/fggLE5Au1L44/jc64IXKH0bUAj7qfTtdmol43mAPV OwXCAhAp/61BOE8dcJlAHNkIdy2dMts7RuHsNJ566TwuKXcsLA5e7RnCd104ichX sDj+pRfkR3IdVFZ/HyHszQK0G1JoFBDjUJf1fIzkTM+xsD9UxZDVdSPC1ScsGm4q vt4Zt7XIojryuovK9jFQ1NUqY+Y/7gpoNu0M+Nds9rjdVzWymrMAC95ZiT932QdD dlKvNcluThi8CP9ghgAq/1xoCbgGooXsRvNiHHe6WaYbC8gXLmkLmo+XyaBL6KA5 zpm5NXAsB0kG6/yHu8Der9sqw0tf8P3+sNv1LR/AsOHJutdxMFhz2zNSynOGr4PP Cg5ad3yeGFv9VGs2LSrdKuWnMjrMHeMudZXSLP5zSSqTRjAtRDslt0zyg6fUEbyp KE1WJiTBK/L0w3cRdTyk =0dfu -----END PGP SIGNATURE-----
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