Your message dated Sun, 02 Oct 2016 16:40:01 +0000 with message-id <e1bqjo1-0002xi...@franck.debian.org> and subject line Bug#838789: fixed in caffe-contrib 1.0.0~rc3+20160930-ga7f950b-1 has caused the Debian Bug report #838789, regarding caffe-contrib: FTBFS: libcaffe.so.1.0.0-rc3: undefined reference to `H5LTget_dataset_ndims' to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 838789: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=838789 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: caffe-contrib Version: 1.0.0~rc3-2 Severity: serious Justification: fails to build from source Hi, caffe-contrib FTBFS in experimental: [...] [100%] Linking CXX executable ../../../test/test.testbin cd "/build/caffe-contrib-1.0.0~rc3/caffe_cuda_build/src/caffe/test" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test.testbin.dir/link.txt --verbose=1 /usr/bin/g++-5 -g -O2 -fdebug-prefix-map=/build/caffe-contrib-1.0.0~rc3=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Wall -Wno-sign-comp are -Wno-uninitialized -O3 -DNDEBUG -fPIE -pie -Wl,-z,relro -Wl,-z,now -Wl,--as-needed CMakeFiles/test.testbin.dir/test_accuracy_layer.cpp.o CMakeFiles/test.testbin.dir/test_argmax_layer.cpp.o CMakeFiles/test.tes tbin.dir/test_batch_norm_layer.cpp.o CMakeFiles/test.testbin.dir/test_batch_reindex_layer.cpp.o CMakeFiles/test.testbin.dir/test_benchmark.cpp.o CMakeFiles/test.testbin.dir/test_bias_layer.cpp.o CMakeFiles/test.tes tbin.dir/test_blob.cpp.o CMakeFiles/test.testbin.dir/test_caffe_main.cpp.o CMakeFiles/test.testbin.dir/test_common.cpp.o CMakeFiles/test.testbin.dir/test_concat_layer.cpp.o CMakeFiles/test.testbin.dir/test_contrast ive_loss_layer.cpp.o CMakeFiles/test.testbin.dir/test_convolution_layer.cpp.o CMakeFiles/test.testbin.dir/test_data_layer.cpp.o CMakeFiles/test.testbin.dir/test_data_transformer.cpp.o CMakeFiles/test.testbin.dir/te st_db.cpp.o CMakeFiles/test.testbin.dir/test_deconvolution_layer.cpp.o CMakeFiles/test.testbin.dir/test_dummy_data_layer.cpp.o CMakeFiles/test.testbin.dir/test_eltwise_layer.cpp.o CMakeFiles/test.testbin.dir/test_e mbed_layer.cpp.o CMakeFiles/test.testbin.dir/test_euclidean_loss_layer.cpp.o CMakeFiles/test.testbin.dir/test_filler.cpp.o CMakeFiles/test.testbin.dir/test_filter_layer.cpp.o CMakeFiles/test.testbin.dir/test_flatte n_layer.cpp.o CMakeFiles/test.testbin.dir/test_gradient_based_solver.cpp.o CMakeFiles/test.testbin.dir/test_hdf5_output_layer.cpp.o CMakeFiles/test.testbin.dir/test_hdf5data_layer.cpp.o CMakeFiles/test.testbin.dir/ test_hinge_loss_layer.cpp.o CMakeFiles/test.testbin.dir/test_im2col_layer.cpp.o CMakeFiles/test.testbin.dir/test_image_data_layer.cpp.o CMakeFiles/test.testbin.dir/test_infogain_loss_layer.cpp.o CMakeFiles/test.tes tbin.dir/test_inner_product_layer.cpp.o CMakeFiles/test.testbin.dir/test_internal_thread.cpp.o CMakeFiles/test.testbin.dir/test_io.cpp.o CMakeFiles/test.testbin.dir/test_layer_factory.cpp.o CMakeFiles/test.testbin. dir/test_lrn_layer.cpp.o CMakeFiles/test.testbin.dir/test_math_functions.cpp.o CMakeFiles/test.testbin.dir/test_maxpool_dropout_layers.cpp.o CMakeFiles/test.testbin.dir/test_memory_data_layer.cpp.o CMakeFiles/test. testbin.dir/test_multinomial_logistic_loss_layer.cpp.o CMakeFiles/test.testbin.dir/test_mvn_layer.cpp.o CMakeFiles/test.testbin.dir/test_net.cpp.o CMakeFiles/test.testbin.dir/test_neuron_layer.cpp.o CMakeFiles/test .testbin.dir/test_platform.cpp.o CMakeFiles/test.testbin.dir/test_pooling_layer.cpp.o CMakeFiles/test.testbin.dir/test_power_layer.cpp.o CMakeFiles/test.testbin.dir/test_protobuf.cpp.o CMakeFiles/test.testbin.dir/t est_random_number_generator.cpp.o CMakeFiles/test.testbin.dir/test_reduction_layer.cpp.o CMakeFiles/test.testbin.dir/test_reshape_layer.cpp.o CMakeFiles/test.testbin.dir/test_scale_layer.cpp.o CMakeFiles/test.testb in.dir/test_sigmoid_cross_entropy_loss_layer.cpp.o CMakeFiles/test.testbin.dir/test_slice_layer.cpp.o CMakeFiles/test.testbin.dir/test_softmax_layer.cpp.o CMakeFiles/test.testbin.dir/test_softmax_with_loss_layer.cp p.o CMakeFiles/test.testbin.dir/test_solver.cpp.o CMakeFiles/test.testbin.dir/test_solver_factory.cpp.o CMakeFiles/test.testbin.dir/test_split_layer.cpp.o CMakeFiles/test.testbin.dir/test_spp_layer.cpp.o CMakeFiles /test.testbin.dir/test_stochastic_pooling.cpp.o CMakeFiles/test.testbin.dir/test_syncedmem.cpp.o CMakeFiles/test.testbin.dir/test_tanh_layer.cpp.o CMakeFiles/test.testbin.dir/test_threshold_layer.cpp.o CMakeFiles/t est.testbin.dir/test_tile_layer.cpp.o CMakeFiles/test.testbin.dir/test_upgrade_proto.cpp.o CMakeFiles/test.testbin.dir/test_util_blas.cpp.o CMakeFiles/cuda_compile.dir/cuda_compile_generated_test_im2col_kernel.cu.o -o ../../../test/test.testbin -rdynamic ../../../lib/libgtest.a ../../../lib/libcaffe.so.1.0.0-rc3 ../../../lib/libproto.a -lboost_system -lboost_thread -lboost_filesystem -lboost_chrono -lboost_date_time -lboost _atomic -lpthread -lpthread -lglog -lgflags -lprotobuf -lhdf5_cpp /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so -lpthread -lpthread -lglog -lgflags -lprotobuf -lhdf5_cpp /usr/lib/x86_64-linux-gnu/hdf5/serial/lib hdf5.so -lsz -lz -ldl -lm -llmdb -lleveldb -lsnappy -lcudart -lcurand -lcublas -Wl,-Bstatic -lcublas_device -Wl,-Bdynamic /usr/lib/x86_64-linux-gnu/libopencv_highgui.so.2.4.9 /usr/lib/x86_64-linux-gnu/libopencv_img proc.so.2.4.9 /usr/lib/x86_64-linux-gnu/libopencv_core.so.2.4.9 -lblas -lpython3.5m -lboost_python-py35 ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTget_dataset_ndims' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTmake_dataset_double' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTmake_dataset_int' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTread_dataset_float' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTmake_dataset_float' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTread_dataset_double' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTmake_dataset_string' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTread_dataset_int' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTfind_dataset' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTget_dataset_info' ../../../lib/libcaffe.so.1.0.0-rc3: undefined reference to `H5LTread_dataset_string' collect2: error: ld returned 1 exit status src/caffe/test/CMakeFiles/test.testbin.dir/build.make:1808: recipe for target 'test/test.testbin' failed make[5]: *** [test/test.testbin] Error 1 I'm *not* attaching the 160 MB build log. But I could look for details if needed. In case it does matter: This was built against hdf5 1.8.16 from sid, not against 1.10 from experimental. IIRC some time ago apt changed how Build-Depends are resolved for packages in experimental, preferring packages from unstable unless a versioned constraint actually requires something from experimental. I remember vaguely to have seen symbol changes during previous rebuilds, but I don't have the old longs any longer. Andreas
--- End Message ---
--- Begin Message ---Source: caffe-contrib Source-Version: 1.0.0~rc3+20160930-ga7f950b-1 We believe that the bug you reported is fixed in the latest version of caffe-contrib, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 838...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Zhou Mo <cdlumin...@gmail.com> (supplier of updated caffe-contrib package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 02 Oct 2016 15:08:56 +0000 Source: caffe-contrib Binary: caffe-cuda caffe-tools-cuda libcaffe-cuda1 libcaffe-cuda-dev python3-caffe-cuda Architecture: source amd64 Version: 1.0.0~rc3+20160930-ga7f950b-1 Distribution: experimental Urgency: medium Maintainer: Debian Science Maintainers <debian-science-maintain...@lists.alioth.debian.org> Changed-By: Zhou Mo <cdlumin...@gmail.com> Description: caffe-cuda - Fast, open framework for Deep Learning (Meta) caffe-tools-cuda - Tools for fast, open framework for Deep Learning (CUDA) libcaffe-cuda-dev - development files for Caffe (CUDA) libcaffe-cuda1 - library of Caffe, deep leanring framework (CUDA) python3-caffe-cuda - Python3 interface of Caffe (CUDA) Closes: 838789 Changes: caffe-contrib (1.0.0~rc3+20160930-ga7f950b-1) experimental; urgency=medium . * Import upstream snapshot (ga7f950b). (Closes: #838789) * Suggest OpenBLAS/Atlas library for metapackage caffe-cuda. * Add git and libboost-dev to make cmake happy. * Update package description. * Update txt2man template d/man/caffe.txt and its corresponding manpage. * Import several patches from source package "caffe" : + cmake-avoid-argument-missing + cmake-fix-python-module-installdir + fix-more-float-comparison-precision-issue * Remove following merged patches: - fix-spelling-error * Remove cherry-picked changes that are already present in this snapshot. - upstream-dont-set-map-size-1TB-in-db-lmdb.patch - upstream-print-to-stderr-for-example-LMDB-code.patch - upstream-update-MNIST-example-to-use-new-DB-classes.patch * Disable -pedantic compiler option to reduce build log size. * Add --list-missing option to dh_install. * Import updated bash completion script d/script/caffe from src:caffe. * Refresh symbols control file. * Synchronize packaging with src:caffe (1.0.0~rc3+20160930-ga7f950b-1). 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