Your message dated Fri, 25 Nov 2016 15:10:38 +0000
with message-id <[email protected]>
and subject line Bug#844140: fixed in mia 2.4.3-4
has caused the Debian Bug report #844140,
regarding mia: FTBFS: lxml.etree.XMLSyntaxError: None
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
844140: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=844140
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: mia
Version: 2.4.3-2
Severity: serious
Tags: stretch sid
User: [email protected]
Usertags: qa-ftbfs-20161111 qa-ftbfs
Justification: FTBFS on amd64
Hi,
During a rebuild of all packages in sid, your package failed to build on
amd64.
Relevant part (hopefully):
> make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 97%] Generating mia-3drigidreg.1
> [ 97%] Built target mia-3dtrackpixelmovement-xml
> [ 98%] Generating ../doc/mia-3dmaskseeded.xml
> [ 98%] Built target mia-3disosurface-from-volume-xml
> [ 98%] Built target mia-3drigidreg-xml
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/python
> /<<PKGBUILDDIR>>/doc/miaxml2man.py
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/mia-3drigidreg.xml
> >/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/mia-3drigidreg.1
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src &&
> MIA_PLUGIN_TESTPATH=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/plugintest//usr/lib/x86_64-linux-gnu/mia-2.4/plugins
> ./mia-3dmaskseeded --help-xml
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/mia-3dmaskseeded.xml
> [ 98%] Built target mia-3dgetsize-xml
> [ 98%] Generating ../doc/mia-3dmaskseeded.xml
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src &&
> MIA_PLUGIN_TESTPATH=/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/plugintest//usr/lib/x86_64-linux-gnu/mia-2.4/plugins
> ./mia-3dmaskseeded --help-xml
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/mia-3dmaskseeded.xml
> [ 98%] Linking CXX executable test-splineparzenmi
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/core && /usr/bin/cmake -E
> cmake_link_script CMakeFiles/test-splineparzenmi.dir/link.txt --verbose=1
> [ 98%] Generating mia-3dmaskseeded.1
> cd /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src && /usr/bin/python
> /<<PKGBUILDDIR>>/doc/miaxml2man.py
> /<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/doc/mia-3dmaskseeded.xml
> >/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/src/mia-3dmaskseeded.1
> /usr/bin/c++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -std=c++11 -fvisibility=hidden -Wl,-z,relro
> -Wl,-z,now -Wl,--as-needed -fvisibility=hidden
> CMakeFiles/test-splineparzenmi.dir/test_splineparzenmi.cc.o -o
> test-splineparzenmi -rdynamic libmiacore-2.4.so.2.0.1
> -lboost_unit_test_framework -lgsl -lgslcblas -lm -lboost_filesystem
> -lboost_system -lpthread -ldl -lfftw3f -lxml++-2.6 -lxml2 -lglibmm-2.4
> -lgobject-2.0 -lglib-2.0 -lsigc-2.0 -litpp
> -Wl,-rpath,/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu/mia/core
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> [ 98%] Built target mia-3drigidreg-man
> make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-x86_64-linux-gnu'
> Traceback (most recent call last):
> File "/<<PKGBUILDDIR>>/doc/miaxml2man.py", line 149, in <module>
> X=parse_file(sys.argv[1])
> File "/<<PKGBUILDDIR>>/doc/miareadxml.py", line 781, in parse_file
> root = etree.XML(stringstree)
> File "src/lxml/lxml.etree.pyx", line 3192, in lxml.etree.XML
> (src/lxml/lxml.etree.c:77490)
> File "src/lxml/parser.pxi", line 1830, in lxml.etree._parseMemoryDocument
> (src/lxml/lxml.etree.c:116674)
> File "src/lxml/parser.pxi", line 1718, in lxml.etree._parseDoc
> (src/lxml/lxml.etree.c:115324)
> File "src/lxml/parser.pxi", line 1090, in lxml.etree._BaseParser._parseDoc
> (src/lxml/lxml.etree.c:109723)
> File "src/lxml/parser.pxi", line 584, in
> lxml.etree._ParserContext._handleParseResultDoc (src/lxml/lxml.etree.c:103584)
> File "src/lxml/parser.pxi", line 694, in lxml.etree._handleParseResult
> (src/lxml/lxml.etree.c:105238)
> File "src/lxml/parser.pxi", line 635, in lxml.etree._raiseParseError
> (src/lxml/lxml.etree.c:104381)
> lxml.etree.XMLSyntaxError: None
> [ 98%] Built target mia-2dsegment-local-cmeans-man
> src/CMakeFiles/mia-3dmaskseeded-man.dir/build.make:63: recipe for target
> 'src/mia-3dmaskseeded.1' failed
> make[4]: *** [src/mia-3dmaskseeded.1] Error 1
The full build log is available from:
http://aws-logs.debian.net/2016/11/11/mia_2.4.3-2_unstable.log
This failure happens on a CPU with TSX extensions available, but is not
reproducible on a machine without them. For context, I recommend reading the
thread starting at https://lists.debian.org/debian-devel/2016/11/msg00210.html
The node used is an Amazon EC2 VM with 64 cores. /proc/cpuinfo says:
model : 79
model name : Intel(R) Xeon(R) CPU E5-2686 v4 @ 2.30GHz
stepping : 1
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: mia
Source-Version: 2.4.3-4
We believe that the bug you reported is fixed in the latest version of
mia, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Gert Wollny <[email protected]> (supplier of updated mia package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 25 Nov 2016 14:08:49 +0000
Source: mia
Binary: libmia-2.4-0 libmia-2.4-dev libmia-2.4-doc mia-tools mia-doctools
mia-tools-doc
Architecture: source
Version: 2.4.3-4
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Gert Wollny <[email protected]>
Description:
libmia-2.4-0 - library for 2D and 3D gray scale image processing
libmia-2.4-dev - library for 2D and 3D gray scale image processing,
development fi
libmia-2.4-doc - library for 2D and 3D gray scale image processing,
documentation
mia-doctools - Helper scripts for run-time document creation
mia-tools - Command line tools for gray scale image processing
mia-tools-doc - Cross-referenced documentation of the MIA command line tools
Closes: 844140
Changes:
mia (2.4.3-4) unstable; urgency=medium
.
* d/p/correct... patch to fix buil dependencies Closes: #844140
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