Your message dated Fri, 09 Dec 2016 09:04:38 +0000
with message-id <[email protected]>
and subject line Bug#847171: fixed in soapdenovo2 240+dfsg1-2
has caused the Debian Bug report #847171,
regarding soapdenovo2: FTBFS with parallel builds (dpkg-buildpackage -J$n, $n >
1)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact [email protected]
immediately.)
--
847171: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=847171
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: soapdenovo2
Version: 240+dfsg1-1
Severity: serious
Justification: fails to build from source
User: [email protected]
Usertags: ftbfs
X-Debbugs-Cc: [email protected]
Dear Maintainer,
soapdenovo2 fails to build from source in unstable/amd64:
[…]
iterate.c: In function 'swapedge':
iterate.c:1653:5: warning: implicit declaration of function 'copyEdge'
[-Wimplicit-function-declaration]
copyEdge ( i, num_ed + 1 + 1 );
^~~~~~~~
iterate.c: In function 'fresh':
iterate.c:2156:37: warning: format '%d' expects argument of type 'int', but
argument 3 has type 'long long int' [-Wformat=]
fprintf ( stderr, "Refresh edge: %d kmer(s) found.\n", newfoundcount );
^
iterate.c:2157:37: warning: format '%d' expects argument of type 'int', but
argument 3 has type 'long long int' [-Wformat=]
fprintf ( stderr, "Refresh edge: %d kmer(s) not found.\n",
newnotfoundcount );
^
iterate.c: In function 'Iterate':
iterate.c:2566:4: warning: implicit declaration of function
'removeWeakEdges2' [-Wimplicit-function-declaration]
removeWeakEdges2 ( cutlen, 1, mink );
^~~~~~~~~~~~~~~~
iterate.c:2567:4: warning: implicit declaration of function
'removeLowCovEdges2' [-Wimplicit-function-declaration]
removeLowCovEdges2 ( cutlen, deLowEdge, mink, 0 );
^~~~~~~~~~~~~~~~~~
iterate.c:2576:4: warning: implicit declaration of function 'cutTipsInGraph2'
[-Wimplicit-function-declaration]
cutTipsInGraph2 ( cutlen, 0, 0 );
^~~~~~~~~~~~~~~
make[2]: Leaving directory '«BUILDDIR»/standardPregraph'
standardPregraph/iterate.o: file not recognized: File truncated
collect2: error: ld returned 1 exit status
make[2]: Leaving directory '«BUILDDIR»/standardPregraph'
Makefile:70: recipe for target 'SOAPdenovo-63mer' failed
make[1]: *** [SOAPdenovo-63mer] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory '«BUILDDIR»'
dh_auto_build: make -j9 returned exit code 2
debian/rules:15: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[…]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` [email protected] / chris-lamb.co.uk
`-
soapdenovo2.240+dfsg1-1.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: soapdenovo2
Source-Version: 240+dfsg1-2
We believe that the bug you reported is fixed in the latest version of
soapdenovo2, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <[email protected]> (supplier of updated soapdenovo2 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 09 Dec 2016 09:32:06 +0100
Source: soapdenovo2
Binary: soapdenovo2
Architecture: source amd64
Version: 240+dfsg1-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Andreas Tille <[email protected]>
Description:
soapdenovo2 - short-read assembly method to build de novo draft assembly
Closes: 847171
Changes:
soapdenovo2 (240+dfsg1-2) unstable; urgency=medium
.
* No parallel build possible (which was enabled by debhelper 10 in the
last change)
Closes: #847171
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