Source: metastudent-data Version: 2.0.1-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
metastudent-data fails to build from source in unstable/amd64:
[…]
dh_auto_build -O--parallel
dh_auto_build: Compatibility levels before 9 are deprecated (level 8 in use)
make -j9
make[1]: Entering directory '«BUILDDIR»'
mkdir -p dataset_201401/BPO/ && \
formatdb -i "dataset_201401/BPO/goasp.fasta" -n
"dataset_201401/BPO/goasp.fasta" && rm -f formatdb.log
mkdir -p dataset_201401/MFO/ && \
formatdb -i "dataset_201401/MFO/goasp.fasta" -n
"dataset_201401/MFO/goasp.fasta" && rm -f formatdb.log
mkdir -p dataset_201401/CCO/ && \
formatdb -i "dataset_201401/CCO/goasp.fasta" -n
"dataset_201401/CCO/goasp.fasta" && rm -f formatdb.log
USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
[-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.5.0+
Use '-help' to print detailed descriptions of command line arguments
========================================================================
Error: Argument "dbtype". Mandatory value is missing: `String, `nucl',
`prot''
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is
missing: `String, `nucl', `prot''
Program failed, try executing the command manually.
Makefile:606: recipe for target 'dataset_201401/MFO/goasp.fasta.psq' failed
make[1]: *** [dataset_201401/MFO/goasp.fasta.psq] Error 1
make[1]: *** Waiting for unfinished jobs....
USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
[-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.5.0+
Use '-help' to print detailed descriptions of command line arguments
========================================================================
Error: Argument "dbtype". Mandatory value is missing: `String, `nucl',
`prot''
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is
missing: `String, `nucl', `prot''
Program failed, try executing the command manually.
Makefile:606: recipe for target 'dataset_201401/BPO/goasp.fasta.psq' failed
make[1]: *** [dataset_201401/BPO/goasp.fasta.psq] Error 1
USAGE
makeblastdb [-h] [-help] [-in input_file] [-input_type type]
-dbtype molecule_type [-title database_title] [-parse_seqids]
[-hash_index] [-mask_data mask_data_files] [-mask_id mask_algo_ids]
[-mask_desc mask_algo_descriptions] [-gi_mask]
[-gi_mask_name gi_based_mask_names] [-out database_name]
[-max_file_sz number_of_bytes] [-logfile File_Name] [-taxid TaxID]
[-taxid_map TaxIDMapFile] [-version]
DESCRIPTION
Application to create BLAST databases, version 2.5.0+
Use '-help' to print detailed descriptions of command line arguments
========================================================================
Error: Argument "dbtype". Mandatory value is missing: `String, `nucl',
`prot''
Error: (CArgException::eNoArg) Argument "dbtype". Mandatory value is
missing: `String, `nucl', `prot''
Program failed, try executing the command manually.
Makefile:606: recipe for target 'dataset_201401/CCO/goasp.fasta.psq' failed
make[1]: *** [dataset_201401/CCO/goasp.fasta.psq] Error 1
make[1]: Leaving directory '«BUILDDIR»'
dh_auto_build: make -j9 returned exit code 2
debian/rules:8: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[…]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
metastudent-data.2.0.1-1.unstable.amd64.log.txt.gz
Description: Binary data
