Your message dated Tue, 20 Dec 2016 13:04:48 +0000
with message-id <e1cjk64-0007nl...@fasolo.debian.org>
and subject line Bug#848105: fixed in libbio-graphics-perl 2.40-1
has caused the Debian Bug report #848105,
regarding libbio-graphics-perl: FTBFS: Failed 1/2 test programs. 0/15 subtests
failed.
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
848105: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848105
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: libbio-graphics-perl
Version: 2.39-5
Severity: serious
Justification: fails to build from source
User: reproducible-bui...@lists.alioth.debian.org
Usertags: ftbfs
X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org
Dear Maintainer,
libbio-graphics-perl fails to build from source in unstable/amd64:
[…]
dh build
dh_testdir
dh_update_autotools_config
dh_auto_configure
perl -I. Build.PL --installdirs vendor --config "optimize=-g -O2
-fdebug-prefix-map=«BUILDDIR»=. -fstack-protector-strong -Wformat
-Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config
"ld=x86_64-linux-gnu-gcc -g -O2
-fdebug-prefix-map=/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39=.
-fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Bio-Graphics' version '2.39'
dh_auto_build
perl Build
Building Bio-Graphics
dh_auto_test
perl Build test --verbose 1
------------- EXCEPTION: Bio::Root::Exception -------------
MSG: The requested glyph class, ``arrow'' is not available: Can't locate
Bio/Coordinate/Pair.pm in @INC (you may need to install the
Bio::Coordinate::Pair module) (@INC contains: . «BUILDDIR»/t/../lib
/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/lib
/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/arch
/etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1
/usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24
/usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24
/usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at
/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/t/../lib/Bio/Graphics/Glyph/arrow.pm
line 13.
BEGIN failed--compilation aborted at
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13.
Compilation failed in require at (eval 43) line 2.
STACK: Error::throw
STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:447
STACK: Bio::Graphics::Glyph::Factory::make_glyph
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:342
STACK: Bio::Graphics::Glyph::make_subglyph
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:310
STACK: Bio::Graphics::Glyph::new «BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:270
STACK: Bio::Graphics::Glyph::Factory::make_glyph
«BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:346
STACK: Bio::Graphics::Panel::_add_track
«BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:414
STACK: Bio::Graphics::Panel::_do_add_track
«BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:386
STACK: Bio::Graphics::Panel::add_track
«BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:312
STACK: Bio::Graphics::FeatureFile::render
«BUILDDIR»/t/../lib/Bio/Graphics/FeatureFile.pm:675
STACK: t/BioGraphics.t:53
-----------------------------------------------------------
# Looks like you planned 49 tests but ran 4.
# Looks like your test exited with 2 just after 4.
t/BioGraphics.t ..
1..49
ok 1 - use GD::Image;
ok 2 - use Bio::Graphics::FeatureFile;
ok 3 - use Bio::Graphics::Panel;
ok 4
Dubious, test returned 2 (wstat 512, 0x200)
Failed 45/49 subtests
t/Wiggle.t .......
1..11
ok 1
ok 2
ok 3
ok 4
ok 5
ok 6
ok 7
ok 8
ok 9
ok 10
ok 11
ok
Test Summary Report
-------------------
t/BioGraphics.t (Wstat: 512 Tests: 4 Failed: 0)
Non-zero exit status: 2
Parse errors: Bad plan. You planned 49 tests but ran 4.
Files=2, Tests=15, 1 wallclock secs ( 0.03 usr 0.00 sys + 0.50 cusr 0.04
csys = 0.57 CPU)
Result: FAIL
Failed 1/2 test programs. 0/15 subtests failed.
dh_auto_test: perl Build test --verbose 1 returned exit code 255
debian/rules:4: recipe for target 'build' failed
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
[…]
The full build log is attached.
Regards,
--
,''`.
: :' : Chris Lamb
`. `'` la...@debian.org / chris-lamb.co.uk
`-
libbio-graphics-perl.2.39-5.unstable.amd64.log.txt.gz
Description: Binary data
--- End Message ---
--- Begin Message ---
Source: libbio-graphics-perl
Source-Version: 2.40-1
We believe that the bug you reported is fixed in the latest version of
libbio-graphics-perl, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 848...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated libbio-graphics-perl
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 20 Dec 2016 12:49:03 +0100
Source: libbio-graphics-perl
Binary: libbio-graphics-perl
Architecture: source all
Version: 2.40-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
libbio-graphics-perl - Generate GD images of Bio::Seq objects
Closes: 848105
Changes:
libbio-graphics-perl (2.40-1) unstable; urgency=medium
.
* New upstream version
* Build-Depends: libbio-coordinate-perl
Closes: #848105
* debhelper 10
* d/watch: version=4
* d/control: Testsuite: autopkgtest-pkg-perl
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