Your message dated Tue, 20 Dec 2016 13:04:48 +0000 with message-id <e1cjk64-0007nl...@fasolo.debian.org> and subject line Bug#848105: fixed in libbio-graphics-perl 2.40-1 has caused the Debian Bug report #848105, regarding libbio-graphics-perl: FTBFS: Failed 1/2 test programs. 0/15 subtests failed. to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 848105: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=848105 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: libbio-graphics-perl Version: 2.39-5 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org Dear Maintainer, libbio-graphics-perl fails to build from source in unstable/amd64: […] dh build dh_testdir dh_update_autotools_config dh_auto_configure perl -I. Build.PL --installdirs vendor --config "optimize=-g -O2 -fdebug-prefix-map=«BUILDDIR»=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" --config "ld=x86_64-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro" Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'Bio-Graphics' version '2.39' dh_auto_build perl Build Building Bio-Graphics dh_auto_test perl Build test --verbose 1 ------------- EXCEPTION: Bio::Root::Exception ------------- MSG: The requested glyph class, ``arrow'' is not available: Can't locate Bio/Coordinate/Pair.pm in @INC (you may need to install the Bio::Coordinate::Pair module) (@INC contains: . «BUILDDIR»/t/../lib /home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/lib /home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/blib/arch /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.24.1 /usr/local/share/perl/5.24.1 /usr/lib/x86_64-linux-gnu/perl5/5.24 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.24 /usr/share/perl/5.24 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at /home/lamby/temp/cdt.20161214084524.WfwH8dO4Qj.db.libbio-graphics-perl/libbio-graphics-perl-2.39/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. BEGIN failed--compilation aborted at «BUILDDIR»/t/../lib/Bio/Graphics/Glyph/arrow.pm line 13. Compilation failed in require at (eval 43) line 2. STACK: Error::throw STACK: Bio::Root::Root::throw /usr/share/perl5/Bio/Root/Root.pm:447 STACK: Bio::Graphics::Glyph::Factory::make_glyph «BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:342 STACK: Bio::Graphics::Glyph::make_subglyph «BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:310 STACK: Bio::Graphics::Glyph::new «BUILDDIR»/t/../lib/Bio/Graphics/Glyph.pm:270 STACK: Bio::Graphics::Glyph::Factory::make_glyph «BUILDDIR»/t/../lib/Bio/Graphics/Glyph/Factory.pm:346 STACK: Bio::Graphics::Panel::_add_track «BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:414 STACK: Bio::Graphics::Panel::_do_add_track «BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:386 STACK: Bio::Graphics::Panel::add_track «BUILDDIR»/t/../lib/Bio/Graphics/Panel.pm:312 STACK: Bio::Graphics::FeatureFile::render «BUILDDIR»/t/../lib/Bio/Graphics/FeatureFile.pm:675 STACK: t/BioGraphics.t:53 ----------------------------------------------------------- # Looks like you planned 49 tests but ran 4. # Looks like your test exited with 2 just after 4. t/BioGraphics.t .. 1..49 ok 1 - use GD::Image; ok 2 - use Bio::Graphics::FeatureFile; ok 3 - use Bio::Graphics::Panel; ok 4 Dubious, test returned 2 (wstat 512, 0x200) Failed 45/49 subtests t/Wiggle.t ....... 1..11 ok 1 ok 2 ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok Test Summary Report ------------------- t/BioGraphics.t (Wstat: 512 Tests: 4 Failed: 0) Non-zero exit status: 2 Parse errors: Bad plan. You planned 49 tests but ran 4. Files=2, Tests=15, 1 wallclock secs ( 0.03 usr 0.00 sys + 0.50 cusr 0.04 csys = 0.57 CPU) Result: FAIL Failed 1/2 test programs. 0/15 subtests failed. dh_auto_test: perl Build test --verbose 1 returned exit code 255 debian/rules:4: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 […] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
libbio-graphics-perl.2.39-5.unstable.amd64.log.txt.gz
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--- Begin Message ---Source: libbio-graphics-perl Source-Version: 2.40-1 We believe that the bug you reported is fixed in the latest version of libbio-graphics-perl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 848...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated libbio-graphics-perl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 20 Dec 2016 12:49:03 +0100 Source: libbio-graphics-perl Binary: libbio-graphics-perl Architecture: source all Version: 2.40-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: libbio-graphics-perl - Generate GD images of Bio::Seq objects Closes: 848105 Changes: libbio-graphics-perl (2.40-1) unstable; urgency=medium . * New upstream version * Build-Depends: libbio-coordinate-perl Closes: #848105 * debhelper 10 * d/watch: version=4 * d/control: Testsuite: autopkgtest-pkg-perl Checksums-Sha1: 9c58af26c78289dd5f60dd523a82f7ea8b966634 2334 libbio-graphics-perl_2.40-1.dsc 8fb40fa229cb179236acfda76da38d4965a9304f 1105973 libbio-graphics-perl_2.40.orig.tar.gz 837081ff36e89aa6460736e29ad0ab9d4793b020 7948 libbio-graphics-perl_2.40-1.debian.tar.xz 20e9c20dd94f5d66a02a65be924f9029ad5d34ed 611214 libbio-graphics-perl_2.40-1_all.deb 208651dc8132196d7d9a1e69f122772c7ffb017b 5478 libbio-graphics-perl_2.40-1_amd64.buildinfo Checksums-Sha256: c9ce360e5ffe5b555899b1dcffdf6d31e468777475db7a5e724899eefbc65e39 2334 libbio-graphics-perl_2.40-1.dsc 7b20bcd9d87f3786b111ddeff2f60a51ec6712273f43547b73325dba3bebed32 1105973 libbio-graphics-perl_2.40.orig.tar.gz 2596e11b23af34f4c0250f82d25737658f309f80987d5da022d7dd723883be64 7948 libbio-graphics-perl_2.40-1.debian.tar.xz 3c8762debb178b713df7bc151a4b3d2fb755618910e83db89d8181a86e48f8c8 611214 libbio-graphics-perl_2.40-1_all.deb 02c2ecc8e469605612d10f6fcc6a5c55a8dac888f48b7cb3c8a03818159db19a 5478 libbio-graphics-perl_2.40-1_amd64.buildinfo Files: 9b2ae66da0eef9e606b81b8077120f8c 2334 perl optional libbio-graphics-perl_2.40-1.dsc 722d00e5229fee3d48c78e12529c1ab0 1105973 perl optional libbio-graphics-perl_2.40.orig.tar.gz 279af2e379f7a6a7258dc08a3481901a 7948 perl optional libbio-graphics-perl_2.40-1.debian.tar.xz 32bbd008cf0597d007f023d25aabf9a2 611214 perl optional libbio-graphics-perl_2.40-1_all.deb 2d49805c1f1b0f95d541701c277680ea 5478 perl optional libbio-graphics-perl_2.40-1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlhZKBgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHLbg//W3G9su4ANhqpRt/sWvkUgQSYIY/WkvlD fowPzHgXAI81M1Hobi5VIT3otDvjqdkNlFTBqJ1OoJNl+Nvoo04WY3EloQnVI3J2 0HktjNYv6MQwmSgVg5vSVIGrZlIbkYQqWmBfk9y5ubtO/+3JrlL7YGfhSzUaE6h1 N//A84YKxnGAPYVhSS5Zj9afM4SoJuNGHVyZAUQR1nHCNbTq2vmXHVMKS7YZ26ok +SJoFPtG+KpRY4NQozdROQdXc5C73+iV6tfAk7khBkdvTmZ5bIixHJah5Wl/WKTk oY+2CRsK8TzdO/HxuKyk2+14mixCtPrWWwY0F0/o5vaeeB7xwm1SwucYaDeFE6UQ 050z0c3Kuzb71UbWXsNZBmMbLi2obUHd80Z6eYwU7Nf8mD4yB1hmzwWjg+4uOL1P lvoLW/vRhE4ZyFAsn6H2CKsbpPIT4xbPqFRoY0lb3n/rcOnapoKFE4aLw0hS6gl1 xz8Adp9ZNBT8Snye7ld6EZx89Nu5BEBUV6cvEdmJpOfy87FPhrs87yoH2+EMgc+U 6NdDgIIBDH70txeCToZlhgtgLodIkIn/9KZEMFYkE0ZCF55W/v+5RfBf3hcjj//T yYUJcsiDzSynOXobxsSrAycqFko3qgBo220R21t5BP1ZK4w8S5zYliQHxpOnQHN2 xRSh3pb6icA= =cQVJ -----END PGP SIGNATURE-----
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