Your message dated Fri, 06 Jan 2017 03:07:48 +0000
with message-id <e1cpkse-0002jk...@fasolo.debian.org>
and subject line Bug#850336: fixed in rmpi 0.6-6-2
has caused the Debian Bug report #850336,
regarding rmpi: FTBFS (Cannot find mpi.h header file)
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
850336: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=850336
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:rmpi
Version: 0.6-6-1
Severity: serious
Dear maintainer:
I tried to build this package in stretch with "dpkg-buildpackage -B"
but it failed:
--------------------------------------------------------------------------------
[...]
debian/rules build-arch
CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use
source format 3.0 (quilt) instead
test -x debian/rules
mkdir -p "."
/usr/bin/make -f debian/rules reverse-config
make[1]: Entering directory '/<<PKGBUILDDIR>>'
CDBS WARNING: simple-patchsys.mk is deprecated since 0.4.85 - please use
source format 3.0 (quilt) instead
make[1]: 'reverse-config' is up to date.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
if [ "debian/stamp-patched" = "reverse-patches" ]; then rm -f
debian/stamp-patched; fi
patches:
if [ "debian/stamp-patched" != "reverse-patches" ]; then touch
debian/stamp-patched; fi
if [ "debian/stamp-patched" != "reverse-patches" ] ; then \
[... snipped ...]
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library --clean \
"--no-test-load" . \
"--built-timestamp=\"Sat, 25 Jun 2016 07:43:11
-0500\"" \
; \
else \
R CMD INSTALL -l
/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library \
--clean "--no-test-load" . \
"--built-timestamp=\"Sat, 25 Jun 2016 07:43:11
-0500\"" \
; \
fi
* installing *source* package 'Rmpi' ...
** package 'Rmpi' successfully unpacked and MD5 sums checked
checking for gcc... gcc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -std=gnu99 -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking mpi.h usability... no
checking mpi.h presence... no
checking for mpi.h... no
configure: error: "Cannot find mpi.h header file"
ERROR: configuration failed for package 'Rmpi'
* removing '/<<PKGBUILDDIR>>/debian/r-cran-rmpi/usr/lib/R/site-library/Rmpi'
/usr/share/R/debian/r-cran.mk:98: recipe for target 'R_any_arch' failed
make: *** [R_any_arch] Error 1
dpkg-buildpackage: error: fakeroot debian/rules binary-arch gave error exit
status 2
--------------------------------------------------------------------------------
This is just how the build ends, not necessarily the relevant part.
I've put several build logs here:
https://people.debian.org/~sanvila/build-logs/rmpi/
If this is really a bug in one of the build-depends, please use reassign and
affects,
so that this is still visible in the page for this package.
The bug should be reproducible with sbuild on a single CPU virtual machine.
Thanks.
--- End Message ---
--- Begin Message ---
Source: rmpi
Source-Version: 0.6-6-2
We believe that the bug you reported is fixed in the latest version of
rmpi, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 850...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Dirk Eddelbuettel <e...@debian.org> (supplier of updated rmpi package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.8
Date: Thu, 05 Jan 2017 19:59:00 -0600
Source: rmpi
Binary: r-cran-rmpi
Architecture: source amd64
Version: 0.6-6-2
Distribution: unstable
Urgency: medium
Maintainer: Dirk Eddelbuettel <e...@debian.org>
Changed-By: Dirk Eddelbuettel <e...@debian.org>
Description:
r-cran-rmpi - GNU R package interfacing MPI libraries for distributed computing
Closes: 850336
Changes:
rmpi (0.6-6-2) unstable; urgency=medium
.
* configure.ac: Add a new location for mpi.h to account for updated
layout in Open MPI 2.0; will send upstream too (Closes: #850336)
* configure: Updated accordingly
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r-cran-rmpi-dbgsym_0.6-6-2_amd64.deb
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Files:
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r-cran-rmpi-dbgsym_0.6-6-2_amd64.deb
808b40d7139c6afaadb2e6312197ca18 194546 gnu-r optional
r-cran-rmpi_0.6-6-2_amd64.deb
4cd8aeea151aac49bb3a1d730f68b151 8326 gnu-r optional
rmpi_0.6-6-2_amd64.buildinfo
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--- End Message ---
