Source: ariba Version: 2.7.1+ds-1 Severity: serious Justification: fails to build from source User: reproducible-bui...@lists.alioth.debian.org Usertags: ftbfs X-Debbugs-Cc: reproducible-b...@lists.alioth.debian.org
Dear Maintainer, ariba fails to build from source in unstable/amd64: […] ====================================================================== FAIL: Test run_bowtie2 unsorted ---------------------------------------------------------------------- Traceback (most recent call last): File "«BUILDDIR»/ariba/tests/mapping_test.py", line 61, in test_run_bowtie2 self.assertListEqual(expected, got) AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTC[857 chars]AT')] != [('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCT[794 chars]AT')] First differing element 0: ('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC') ('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT') - [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC'), - ('1', 147, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'), ? ^ ^^ + [('1', 153, 'ref', 30, [(0, 25)], 'AGGATACAGATCTTGTGGGAAAGGT'), ? ^ ^^ + ('1', 69, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC'), - ('2', 99, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'), ? ^^ + ('2', 73, 'ref', 124, [(0, 25)], 'TAATGTTCTTAGGGCTTACCATAGA'), ? ^^ - ('2', 147, 'ref', 170, [(0, 20), (4, 5)], 'TCCACCTTAGCTAAGCGCAGACTCG'), + ('2', 133, None, 124, [], 'CGAGTCTGCGCTTAGCTAAGGTGGA'), ('3', 73, 'ref', 86, [(0, 25)], 'TCGGGTCTGTACAAGGACGGATGGT'), ('3', 133, None, 86, [], 'CGTACTGACTGACTGACGTACTGCA'), ('4', 99, 'ref', 55, [(0, 25)], 'CCGCCGGGAAGTCCTTCTGTCGTGC'), ('4', 147, 'ref', 136, [(0, 25)], 'GGCTTACCATAGAGGTACACTAAAA'), - ('5', 99, 'ref', 0, [(4, 2), (0, 23)], 'CCTCCACAGGATGGTGGTATACCTG'), ? ^^ ^^ -- ^ --------------- + ('5', 77, None, -1, [], 'CCTCCACAGGATGGTGGTATACCTG'), ? ^^ ^^^ ^^ - ('5', 147, 'ref', 166, [(0, 24), (4, 1)], 'TTCATCCACCTTAGCTAAGCGCAGA'), + ('5', 141, None, -1, [], 'TCTGCGCTTAGCTAAGGTGGATGAA'), ('6', 77, None, -1, [], 'CAGTTGCATGACGTCATGCAGTCAT'), ('6', 141, None, -1, [], 'AATGAGTATGATGAGTAATGGTATG'), ('7', 99, 'ref', 56, [(4, 1), (0, 23), (4, 1)], 'ACGCCGGGAAGTCCTTCTGTCGTGT'), ('7', 147, 'ref', 136, [(0, 24), (4, 1)], 'GGCTTACCATAGAGGTACACTAAAT')] ====================================================================== FAIL: Test run_bowtie2 sorted ---------------------------------------------------------------------- Traceback (most recent call last): File "«BUILDDIR»/ariba/tests/mapping_test.py", line 102, in test_run_bowtie2_and_sort self.assertListEqual(expected, got) AssertionError: Lists differ: [('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTC[857 chars]TG')] != [('1', 69, None, 30, [], 'AGCCCTCCACAGGATGGTGGTA[794 chars]TG')] First differing element 0: ('1', 99, 'ref', 0, [(4, 5), (0, 20)], 'AGCCCTCCACAGGATGGTGGTATAC') ('1', 69, None, 30, [], 'AGCCCTCCACAGGATGGTGGTATAC') Diff is 1432 characters long. Set self.maxDiff to None to see it. ---------------------------------------------------------------------- Ran 317 tests in 59.987s FAILED (failures=2) debian/rules:23: recipe for target 'override_dh_auto_test' failed make[1]: *** [override_dh_auto_test] Error 1 make[1]: Leaving directory '«BUILDDIR»' debian/rules:10: recipe for target 'build' failed make: *** [build] Error 2 dpkg-buildpackage: error: debian/rules build gave error exit status 2 […] The full build log is attached. Regards, -- ,''`. : :' : Chris Lamb `. `'` la...@debian.org / chris-lamb.co.uk `-
ariba.2.7.1+ds-1.unstable.amd64.log.txt.gz
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