Source: r-bioc-genomeinfodb Version: 1.10.2-1 Severity: grave Affects: r-bioc-annotationhub Tags: upstream fixed-upstream
Hi Maintainer Autopkgtests of r-bioc-annotationhub started failing on 2017-0126 [1] with the following error: Error in checkIdentical(setNames(rep(c(FALSE, TRUE), c(4, 1)), chr), GenomeInfoDb::isCircular(gr1)) : FALSE In addition: Warning messages: 1: In file(file, "rt") : URL 'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt': status was '404 Not Found' 2: In file(file, "rt") : URL 'https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/All/GCF_000001405.13.assembly.txt': status was '404 Not Found' require("xxx_foo") Upon investigation, I found that NCBI recently reorganized the data on the Genomes FTP site [2]. A new upstream version 1.10.3 is available [3], and it seems the only changes relate to this reorganization. I have not yet verified that this fixes r-bioc-annotationhub's autopkgtests, or that it is the only affected package. Regards Graham [1] https://ci.debian.net/packages/r/r-bioc-annotationhub/unstable/amd64/ [2] https://ftp.ncbi.nlm.nih.gov/genomes/ASSEMBLY_REPORTS/README_change_notice.txt [3] https://bioconductor.org/packages/release/bioc/html/GenomeInfoDb.html