Here is a follow-up, and for kicks with some R scripting.
It requires sources to have directory names like 'class-7.3-14', ie (CRAN)
package name followed by (CRAN) version.
Shell script:
-----------------------------------------------------------------------------
#!/bin/bash
newfunc() {
## source directories are all named foo-1.2.3
dirs=$(find . -maxdepth 1 -type d -name \*-\* | sort)
for d in ${dirs}; do
if test -d ${d}/src; then
if grep -q -r \\.Fortran\( ${d}/R; then
fortran=TRUE
else
fortran=FALSE
fi
if grep -q -r \\.C\( ${d}/R; then
ccall=TRUE
else
ccall=FALSE
fi
if grep -q "Priority: recommended" ${d}/DESCRIPTION; then
recommended=TRUE
else
recommended=FALSE
fi
if [[ "${fortran}" == "TRUE" || "${ccall}" == "TRUE" ]]; then
pretty=$(basename ${d})
echo "${pretty} ${fortran} ${ccall} ${recommended}"
fi
fi
done
}
newfunc
-----------------------------------------------------------------------------
We can call this from R to be able to tabulate the columns
R script
-----------------------------------------------------------------------------
dat <- read.table(pipe("./checkCandFortranCall.sh"),
col.names=c("package", "dotFortran", "dotC", "recommended"))
library(data.table)
setDT(dat)
sapply(dat[, -1], table) # counts by type
dat[recommended==TRUE, ]
dat[recommended==FALSE, ]
-----------------------------------------------------------------------------
which on my box gives
dotFortran dotC recommended
FALSE 28 13 37
TRUE 20 35 11
indicating a fair number (still around a third of my r-cran-* packages).
I think I will cover these by hand now:
package dotFortran dotC recommended
1: class-7.3-14 FALSE TRUE TRUE
2: cluster-2.0.6 TRUE TRUE TRUE
3: foreign-0.8.68 FALSE TRUE TRUE
4: KernSmooth-2.23-15 TRUE FALSE TRUE
5: MASS-7.3-47 FALSE TRUE TRUE
6: Matrix-1.2-10 FALSE TRUE TRUE
7: mgcv-1.8-17 FALSE TRUE TRUE
8: nlme-3.1.131 TRUE TRUE TRUE
9: nnet-7.3-12 FALSE TRUE TRUE
10: spatial-7.3-11 FALSE TRUE TRUE
11: survival-2.41-3 FALSE TRUE TRUE
and we should binNMU the remaining ones satisfying
binary: any (ie applicable for Debian binNMUs)
has either .C() or .Fortran()
I have access to a fully expanded directory of CRAN sources of if we start we
the reverse depends I can refine the script above to get a set of packages
for which we can then set up binNMUs.
One caveat: the shell script does not (yet?) filter out those packages that
already had a post R 3.3.3 update which includes eg several from the set above.
Dirk
--
http://dirk.eddelbuettel.com | @eddelbuettel | e...@debian.org
