Package: bcftools
Version: 1.5-1
Severity: serious
The new version of bcftools no longer builds on ppc64el, it is suffering from
test failures.
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.bam 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view | grep -v
^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | grep -v ^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
test_mpileup:
/<<PKGBUILDDIR>>/bcftools mpileup -a AD -f /<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.fa -Ob
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.cram 2>/dev/null | /<<PKGBUILDDIR>>/bcftools view | grep -v
^##bcftools | grep -v ^##reference
The outputs differ:
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out
/<<PKGBUILDDIR>>/test/mpileup/indel-AD.1.out.new
.. failed ...
