Your message dated Mon, 05 Mar 2018 16:34:20 +0000 with message-id <e1est48-0003aj...@fasolo.debian.org> and subject line Bug#891335: fixed in clonalframe 1.2-8 has caused the Debian Bug report #891335, regarding clonalframe: FTBFS with glibc 2.27: error: 'UNDERFLOW' was not declared in this scope to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 891335: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=891335 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Package: clonalframe Version: 1.2-7 Severity: important User: debian-gl...@lists.debian.org Usertags: 2.27 clonalframe 1.2-7 fails to build with glibc 2.27 (2.27-0experimental0 from experimental): | g++ -c -pipe -W -Wall -O3 -static -DHAVE_INLINE -DGSL_RANGE_CHECK_OFF -Isrc -O2 -Wall -W -fPIC -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -I. -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -o build/util.o src/util.cpp | src/util.cpp: In static member function 'static void wb::Util::normalize(double*, int)': | src/util.cpp:83:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] | for (unsigned int i=0;i<size;i++) sum+=v[i]; | ~^~~~~ | src/util.cpp:85:32: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] | for (unsigned int i=0;i<size;i++) v[i]/=sum; | ~^~~~~ | src/util.cpp: In static member function 'static double wb::Util::lBinoProb(int, int, double)': | src/util.cpp:109:36: error: 'UNDERFLOW' was not declared in this scope | if (runningtotal < UNDERFLOW) | ^~~~~~~~~ | src/util.cpp:109:36: note: suggested alternative: 'EOVERFLOW' | if (runningtotal < UNDERFLOW) | ^~~~~~~~~ | EOVERFLOW | src/util.cpp:118:36: error: 'OVERFLOW' was not declared in this scope | if (runningtotal > OVERFLOW) | ^~~~~~~~ | src/util.cpp:118:36: note: suggested alternative: 'EOVERFLOW' | if (runningtotal > OVERFLOW) | ^~~~~~~~ | EOVERFLOW | src/util.cpp:130:36: error: 'UNDERFLOW' was not declared in this scope | if (runningtotal < UNDERFLOW) | ^~~~~~~~~ | src/util.cpp:130:36: note: suggested alternative: 'EOVERFLOW' | if (runningtotal < UNDERFLOW) | ^~~~~~~~~ | EOVERFLOW | src/util.cpp:139:36: error: 'OVERFLOW' was not declared in this scope | if (runningtotal > OVERFLOW) | ^~~~~~~~ | src/util.cpp:139:36: note: suggested alternative: 'EOVERFLOW' | if (runningtotal > OVERFLOW) | ^~~~~~~~ | EOVERFLOW | Makefile:614: recipe for target 'build/util.o' failed | make[2]: *** [build/util.o] Error 1 | make[2]: Leaving directory '/<<PKGBUILDDIR>>' | debian/rules:21: recipe for target 'override_dh_auto_build' failed | make[1]: *** [override_dh_auto_build] Error 2 | make[1]: Leaving directory '/<<PKGBUILDDIR>>' | debian/rules:14: recipe for target 'build-arch' failed | make: *** [build-arch] Error 2 | dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 A full build log is available there: http://aws-logs.debian.net/2018/02/07/glibc-exp/clonalframe_1.2-7_unstable_glibc-exp.log Starting with glibc 2.27, support for SVID error handling has been removed, including the corresponding constants. This causes this package to FTBFS.
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--- Begin Message ---Source: clonalframe Source-Version: 1.2-8 We believe that the bug you reported is fixed in the latest version of clonalframe, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 891...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated clonalframe package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Mon, 05 Mar 2018 17:15:32 +0100 Source: clonalframe Binary: clonalframe Architecture: source Version: 1.2-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: clonalframe - inference of bacterial microevolution using multilocus sequence d Closes: 891335 Changes: clonalframe (1.2-8) unstable; urgency=medium . [ Adrian Bunk ] * comment out erroneous unused code which breaks build with glibc 2.27 Closes: #891335 . [ Andreas Tille ] * cme fix dpkg-copyright * Standards-Version: 4.1.3 * debhelper 11 Checksums-Sha1: 8d823a928443a4a69e005c2880d03eb3feeb2b54 2008 clonalframe_1.2-8.dsc 0fdb1f66bdaf872918f187fa205b1b3904293c20 5076 clonalframe_1.2-8.debian.tar.xz 2b2109ae8ee30387f66f5045a9e8bab641e8b3d7 13390 clonalframe_1.2-8_source.buildinfo Checksums-Sha256: de9aa9fff8597011bf638d61dfc196672f9912b23c2085e36e52626ec2c2cf85 2008 clonalframe_1.2-8.dsc 07f23cb24ff0ea2c5784d4c0442ce52a1551b8a12ef65810a98595c901cc78aa 5076 clonalframe_1.2-8.debian.tar.xz 7bf8ea4fd92b2f9a5074fdcdef689628a8b89e5c83671016f6f5ad756c0a4276 13390 clonalframe_1.2-8_source.buildinfo Files: d711ac95bc5a479e630b5e43e8fc646a 2008 science optional clonalframe_1.2-8.dsc 0d8be4c7f5c9af917674582d5d8411e5 5076 science optional clonalframe_1.2-8.debian.tar.xz 063904bd2e48079b2dc3a9cce59fa54e 13390 science optional clonalframe_1.2-8_source.buildinfo -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlqdbh8OHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGqlg//eQudhkbfDrnoEzjmVSKRwKyDnOBPgbNrViw0 Tnn58YYzjitQEWg12QrRAKlNxlmMNBugsUhwJdVjoZS0mRrDjHZaEIfSl+q/DzgQ MAqlogaNeS2XCeaswEuDwot1pqKllm1J15ghF18722KuDc3XGd3pe4tQ80QgUiXo 3V0OM0Iii6Df2JXqhRw8xIGIKxK2bi2Of/v69purEmKXMzXfN47pc51ZCpi1IcJO lUEpKWuwsg0tpSxTjdi7P3805ye3ja6OzmJVXnYKk5cRxNQ1Hqu6s/HB54SJisbO oQs6WBCWJss7hQC+18dCUSGKHQji503p5g1xd+WWzE/rOgjOo/DWjAx6p41HUpwQ sAU3gcE7d5bPNqUPQUTSM//D23nhR5yCfBUaH/9OE9efGkU+L+xYiNgKUvOAYDyj xSPRfM/uFhxhMVBV608jjLVXkpI5kR8Q9BeIy0WJEEfndI8OfBj/6CWcRjTrBPVK KDksjJ1Qffc9TPtti2D0Aft2ltYSvuXQAbz/PcjU1IadqxkDj7lDrmKnmv3Yp6dP 2/tf27tslEPeutPZg6QHBRYcQUlyb8GeYtNx3VXujVSwVmjZ+oiWV+7GlO8H+vkg dWfxxfqk8FmLl8XeebJZjAcXuDk9d5GxOPBmm1mvno1LHX2FURBfTQGS3OFiDQk+ 36cpKmU= =XdT7 -----END PGP SIGNATURE-----
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