Your message dated Fri, 06 Jul 2018 10:37:33 +0000
with message-id <e1fbo7j-000e21...@fasolo.debian.org>
and subject line Bug#902592: fixed in spades 3.11.1+dfsg-2
has caused the Debian Bug report #902592,
regarding spades ftbfs with new nlopt in unstable
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
902592: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=902592
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:spades
Version: 3.11.1+dfsg-1
Severity: serious
Tags: sid buster
spades ftbfs with the new nlopt in unstable:
[ 49%] Building CXX object
common/modules/coverage_model/CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o
cd /<<BUILDDIR>>/spades-3.11.1+dfsg/build_spades/common/modules/coverage_model
&& /usr/bin/c++ -DJEMALLOC_NO_DEMANGLE -DUSE_GLIBCXX_PARALLEL=1
-I/<<BUILDDIR>>/spades-3.11.1+dfsg/build_spades/common/modules/coverage_model
-I/<<BUILDDIR>>/spades-3.11.1+dfsg/src/common/modules/coverage_model
-I/<<BUILDDIR>>/spades-3.11.1+dfsg/src/include
-I/<<BUILDDIR>>/spades-3.11.1+dfsg/build_spades/include
-I/<<BUILDDIR>>/spades-3.11.1+dfsg/src
-I/<<BUILDDIR>>/spades-3.11.1+dfsg/src/common -isystem
/<<BUILDDIR>>/spades-3.11.1+dfsg/src/../ext/include -g -O2
-fdebug-prefix-map=/<<BUILDDIR>>/spades-3.11.1+dfsg=. -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp
-std=c++11 -O2 -g -DNDEBUG -UNDEBUG -Wno-deprecated -g3 -O2 -Wall -Wextra
-Wconversion -Wno-sign-conversion -Wno-long-long -Wwrite-strings -o
CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o -c
/<<BUILDDIR>>/spades-3.11.1+dfsg/src/common/modules/coverage_model/kmer_coverage_model.cpp
/<<BUILDDIR>>/spades-3.11.1+dfsg/src/common/modules/coverage_model/kmer_coverage_model.cpp:21:10:
fatal error: nlopt.hpp: No such file or directory
#include <nlopt.hpp>
^~~~~~~~~~~
compilation terminated.
common/modules/coverage_model/CMakeFiles/coverage_model.dir/build.make:62:
recipe for target
'common/modules/coverage_model/CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o'
failed
make[4]: ***
[common/modules/coverage_model/CMakeFiles/coverage_model.dir/kmer_coverage_model.cpp.o]
Error 1
make[4]: Leaving directory '/<<BUILDDIR>>/spades-3.11.1+dfsg/build_spades'
CMakeFiles/Makefile2:1310: recipe for target
'common/modules/coverage_model/CMakeFiles/coverage_model.dir/all' failed
make[3]: *** [common/modules/coverage_model/CMakeFiles/coverage_model.dir/all]
Error 2
make[3]: Leaving directory '/<<BUILDDIR>>/spades-3.11.1+dfsg/build_spades'
Makefile:151: recipe for target 'all' failed
make[2]: *** [all] Error 2
--- End Message ---
--- Begin Message ---
Source: spades
Source-Version: 3.11.1+dfsg-2
We believe that the bug you reported is fixed in the latest version of
spades, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 902...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated spades package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Fri, 06 Jul 2018 10:54:09 +0200
Source: spades
Binary: spades
Architecture: source
Version: 3.11.1+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Description:
spades - genome assembler for single-cell and isolates data sets
Closes: 902592
Changes:
spades (3.11.1+dfsg-2) unstable; urgency=medium
.
* Build-Depends: libnlopt-cxx-dev
Closes: #902592
* d/rules:
+ filter nocheck,$(DEB_BUILD_OPTIONS)
+ do not parse d/changelog
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
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--- End Message ---
