control: close -1 Hi Antonio,
The log is available here and the autopkgtest version used is 5.4.1~bpo9+2 http://debomatic-amd64.debian.net/distribution#unstable/h5py/2.8.0-1/autopkgtest So I think it would be fixed when the backported backage is updated. Sorry for the noise. On Sat, Aug 04, 2018 at 01:31:27PM -0300, Antonio Terceiro wrote: > Control: tag -1 + moreinfo unreproducible > > On Sat, Aug 04, 2018 at 03:11:17PM +0000, Lumin wrote: > > Package: autopkgtest > > Version: 5.4.2 > > Severity: serious > > > > the "su" command from util-linux breaks autopkgtest. The previous > > working one comes from shadow. > > > > python-h5py-dbg is already the newest version (2.8.0-1). > > python-h5py-dbg set to manually installed. > > python-h5py is already the newest version (2.8.0-1). > > python-h5py set to manually installed. > > 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. > > (Reading database ... 13709 files and directories currently installed.) > > Removing autopkgtest-satdep (0) ... > > autopkgtest [16:38:33]: test command1: set -e ; for py in $(pyversions -r > > 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c > > "import h5py; h5py.run_tests()" ; echo "Testing with $py-dbg:" ; $py-dbg -c > > "import h5py; h5py.run_tests()" ; done > > autopkgtest [16:38:33]: test command1: [----------------------- > > su: user does not exist > > autopkgtest [16:38:33]: test command1: -----------------------] > > Unexpected error: > > Traceback (most recent call last): > > File "/usr/share/autopkgtest/lib/VirtSubproc.py", line 717, in mainloop > > command() > > File "/usr/share/autopkgtest/lib/VirtSubproc.py", line 646, in command > > r = f(c, ce) > > File "/usr/share/autopkgtest/lib/VirtSubproc.py", line 584, in cmd_copyup > > copyupdown(c, ce, True) > > File "/usr/share/autopkgtest/lib/VirtSubproc.py", line 469, in copyupdown > > copyupdown_internal(ce[0], c[1:], upp) > > File "/usr/share/autopkgtest/lib/VirtSubproc.py", line 494, in > > copyupdown_internal > > copyup_shareddir(sd[0], sd[1], dirsp, downtmp_host) > > File "/usr/share/autopkgtest/lib/VirtSubproc.py", line 408, in > > copyup_shareddir > > shutil.copy(tb, host) > > File "/usr/lib/python3.5/shutil.py", line 241, in copy > > copyfile(src, dst, follow_symlinks=follow_symlinks) > > File "/usr/lib/python3.5/shutil.py", line 120, in copyfile > > with open(src, 'rb') as fsrc: > > FileNotFoundError: [Errno 2] No such file or directory: > > '/var/run/schroot/mount/unstable-amd64-debomatic-98e10886-4014-46ea-a35e-37ffe71bdcf3/tmp/autopkgtest.mZ5fp7/command1-stdout' > > autopkgtest [16:38:34]: ERROR: testbed failure: unexpected eof from the > > testbed > > Are you sure you saw this with autopkgtest 5.4.2? This bug was present > 5.4.1, but explicitly fixed in 5.4.2. > > See the attached log for an attempt I just made at reproducing this. The > tests fail but autopkgtest itself works as expected. > autopkgtest [13:26:52]: version 5.4.2 > autopkgtest [13:26:52]: host lemur; command line: /usr/bin/autopkgtest > --apt-upgrade --log-file /tmp/log -B h5py -- lxc --sudo > autopkgtest-unstable-amd64 > autopkgtest: WARNING: running as root in testbed, because no normal user > could be determined > autopkgtest [13:27:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup > Get:1 http://deb.debian.org/debian unstable InRelease [233 kB] > Get:2 http://deb.debian.org/debian unstable/non-free Sources.diff/Index [27.8 > kB] > Get:3 http://deb.debian.org/debian unstable/main Sources.diff/Index [27.9 kB] > Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index > [27.9 kB] > Get:5 http://deb.debian.org/debian unstable/contrib amd64 Packages.diff/Index > [27.8 kB] > Get:6 http://deb.debian.org/debian unstable/non-free Sources > 2018-08-03-2013.11.pdiff [1,306 B] > Get:7 http://deb.debian.org/debian unstable/non-free Sources > 2018-08-04-0814.44.pdiff [665 B] > Get:8 http://deb.debian.org/debian unstable/main Sources > 2018-08-02-1416.04.pdiff [5,521 B] > Get:7 http://deb.debian.org/debian unstable/non-free Sources > 2018-08-04-0814.44.pdiff [665 B] > Get:9 http://deb.debian.org/debian unstable/main Sources > 2018-08-02-2015.39.pdiff [10.3 kB] > Get:10 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-0208.52.pdiff [3,145 B] > Get:11 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-0811.08.pdiff [15.6 kB] > Get:12 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-1408.50.pdiff [39.5 kB] > Get:13 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-2013.11.pdiff [8,876 B] > Get:14 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-0211.02.pdiff [5,928 B] > Get:15 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-0814.44.pdiff [11.7 kB] > Get:16 http://incoming.debian.org/debian-buildd buildd-unstable InRelease > [55.3 kB] > Get:17 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-1411.17.pdiff [12.2 kB] > Get:18 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-02-1416.04.pdiff [27.6 kB] > Get:19 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-02-2015.39.pdiff [16.0 kB] > Get:17 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-1411.17.pdiff [12.2 kB] > Get:20 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-0208.52.pdiff [2,583 B] > Get:21 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-0811.08.pdiff [13.7 kB] > Get:22 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-1408.50.pdiff [43.3 kB] > Get:23 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-2013.11.pdiff [33.6 kB] > Get:24 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-0211.02.pdiff [4,425 B] > Get:25 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-0814.44.pdiff [20.5 kB] > Get:26 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-1411.17.pdiff [9,739 B] > Get:27 http://deb.debian.org/debian unstable/contrib amd64 Packages > 2018-08-04-0211.02.pdiff [460 B] > Get:26 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-1411.17.pdiff [9,739 B] > Get:27 http://deb.debian.org/debian unstable/contrib amd64 Packages > 2018-08-04-0211.02.pdiff [460 B] > Get:28 http://incoming.debian.org/debian-buildd buildd-unstable/main Sources > [111 kB] > Get:29 http://incoming.debian.org/debian-buildd buildd-unstable/main amd64 > Packages [153 kB] > Fetched 950 kB in 2s (491 kB/s) > Reading package lists... > Reading package lists... > Building dependency tree... > Reading state information... > Calculating upgrade... > The following packages will be upgraded: > bsdutils dbus fdisk gcc-8-base libblkid1 libdbus-1-3 libfdisk1 libgcc1 > libmount1 libpcre3 libsmartcols1 libstdc++6 libuuid1 make mount util-linux > 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. > Need to get 4,013 kB of archives. > After this operation, 38.9 kB of additional disk space will be used. > Get:1 http://deb.debian.org/debian unstable/main amd64 bsdutils amd64 > 1:2.32-0.4 [117 kB] > Get:2 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 > 2.32-0.4 [77.6 kB] > Get:3 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 > 2.32-0.4 [190 kB] > Get:4 http://deb.debian.org/debian unstable/main amd64 libfdisk1 amd64 > 2.32-0.4 [229 kB] > Get:5 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 > 2.32-0.4 [201 kB] > Get:6 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 > 2.32-0.4 [146 kB] > Get:7 http://deb.debian.org/debian unstable/main amd64 fdisk amd64 2.32-0.4 > [168 kB] > Get:8 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 > 2.32-0.4 [974 kB] > Get:9 http://deb.debian.org/debian unstable/main amd64 mount amd64 2.32-0.4 > [164 kB] > Get:10 http://deb.debian.org/debian unstable/main amd64 gcc-8-base amd64 > 8.2.0-3 [186 kB] > Get:11 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 > 8.2.0-3 [393 kB] > Get:12 http://deb.debian.org/debian unstable/main amd64 libgcc1 amd64 > 1:8.2.0-3 [40.7 kB] > Get:13 http://deb.debian.org/debian unstable/main amd64 libpcre3 amd64 > 2:8.39-11 [341 kB] > Get:14 http://deb.debian.org/debian unstable/main amd64 dbus amd64 1.12.10-1 > [233 kB] > Get:15 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 > 1.12.10-1 [211 kB] > Get:16 http://deb.debian.org/debian unstable/main amd64 make amd64 4.2.1-1.2 > [341 kB] > debconf: delaying package configuration, since apt-utils is not installed > Fetched 4,013 kB in 1s (7,975 kB/s) > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../bsdutils_1%3a2.32-0.4_amd64.deb ... > Unpacking bsdutils (1:2.32-0.4) over (1:2.32-0.3) ... > Setting up bsdutils (1:2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libuuid1_2.32-0.4_amd64.deb ... > Unpacking libuuid1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libuuid1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libblkid1_2.32-0.4_amd64.deb ... > Unpacking libblkid1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libblkid1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libfdisk1_2.32-0.4_amd64.deb ... > Unpacking libfdisk1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libfdisk1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libmount1_2.32-0.4_amd64.deb ... > Unpacking libmount1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libmount1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libsmartcols1_2.32-0.4_amd64.deb ... > Unpacking libsmartcols1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libsmartcols1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../fdisk_2.32-0.4_amd64.deb ... > Unpacking fdisk (2.32-0.4) over (2.32-0.3) ... > Setting up fdisk (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../util-linux_2.32-0.4_amd64.deb ... > Unpacking util-linux (2.32-0.4) over (2.32-0.3) ... > Setting up util-linux (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../mount_2.32-0.4_amd64.deb ... > Unpacking mount (2.32-0.4) over (2.32-0.3) ... > Preparing to unpack .../gcc-8-base_8.2.0-3_amd64.deb ... > Unpacking gcc-8-base:amd64 (8.2.0-3) over (8.2.0-1) ... > Setting up gcc-8-base:amd64 (8.2.0-3) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libstdc++6_8.2.0-3_amd64.deb ... > Unpacking libstdc++6:amd64 (8.2.0-3) over (8.2.0-1) ... > Setting up libstdc++6:amd64 (8.2.0-3) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libgcc1_1%3a8.2.0-3_amd64.deb ... > Unpacking libgcc1:amd64 (1:8.2.0-3) over (1:8.2.0-1) ... > Setting up libgcc1:amd64 (1:8.2.0-3) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libpcre3_2%3a8.39-11_amd64.deb ... > Unpacking libpcre3:amd64 (2:8.39-11) over (2:8.39-10) ... > Setting up libpcre3:amd64 (2:8.39-11) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../dbus_1.12.10-1_amd64.deb ... > Unpacking dbus (1.12.10-1) over (1.12.8-3) ... > Preparing to unpack .../libdbus-1-3_1.12.10-1_amd64.deb ... > Unpacking libdbus-1-3:amd64 (1.12.10-1) over (1.12.8-3) ... > Preparing to unpack .../make_4.2.1-1.2_amd64.deb ... > Unpacking make (4.2.1-1.2) over (4.2.1-1.1) ... > Setting up make (4.2.1-1.2) ... > Setting up mount (2.32-0.4) ... > Processing triggers for libc-bin (2.27-5) ... > Processing triggers for systemd (239-7) ... > Setting up libdbus-1-3:amd64 (1.12.10-1) ... > Setting up dbus (1.12.10-1) ... > A reboot is required to replace the running dbus-daemon. > Please reboot the system when convenient. > Processing triggers for libc-bin (2.27-5) ... > autopkgtest [13:27:09]: rebooting testbed after setup commands that affected > boot > autopkgtest [13:27:29]: testbed running kernel: Linux 4.17.0-1-amd64 #1 SMP > Debian 4.17.8-1 (2018-07-20) > autopkgtest [13:27:29]: testbed dpkg architecture: amd64 > autopkgtest [13:27:29]: @@@@@@@@@@@@@@@@@@@@ apt-source h5py > Get:1 http://deb.debian.org/debian unstable/main h5py 2.7.1-2 (dsc) [2,668 B] > Get:2 http://deb.debian.org/debian unstable/main h5py 2.7.1-2 (tar) [264 kB] > Get:3 http://deb.debian.org/debian unstable/main h5py 2.7.1-2 (diff) [7,756 B] > gpgv: unknown type of key resource 'trustedkeys.kbx' > gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error > gpgv: Signature made Mon 11 Sep 2017 10:14:27 AM UTC > gpgv: using RSA key 8F58342BEABE1EF4379551FBB193770C186A1C7D > gpgv: Can't check signature: No public key > dpkg-source: warning: failed to verify signature on ./h5py_2.7.1-2.dsc > autopkgtest [13:27:30]: testing package h5py version 2.7.1-2 > autopkgtest [13:27:30]: build not needed > autopkgtest [13:27:30]: test command1: preparing testbed > Reading package lists... > Building dependency tree... > Reading state information... > Correcting dependencies...Starting pkgProblemResolver with broken count: 0 > Starting 2 pkgProblemResolver with broken count: 0 > Done > Done > Starting pkgProblemResolver with broken count: 0 > Starting 2 pkgProblemResolver with broken count: 0 > Done > The following additional packages will be installed: > libaec0 libblas3 libgfortran5 libhdf5-100 liblapack3 libpython-all-dbg > libpython-dbg libpython-stdlib libpython2-dbg libpython2-stdlib > libpython2.7-dbg libpython2.7-minimal libpython2.7-stdlib libquadmath0 > libsz2 mime-support python python-all python-all-dbg python-dbg python-h5py > python-h5py-dbg python-minimal python-numpy python-numpy-dbg python-six > python2 python2-dbg python2-minimal python2.7 python2.7-dbg > python2.7-minimal > Suggested packages: > python2.7-gdbm-dbg python2.7-tk-dbg python-doc python-tk python-h5py-doc gcc > gfortran python-dev python-nose python-numpy-doc python2-doc python2.7-doc > python-gdbm-dbg python-tk-dbg binfmt-support > Recommended packages: > file > The following NEW packages will be installed: > libaec0 libblas3 libgfortran5 libhdf5-100 liblapack3 libpython-all-dbg > libpython-dbg libpython-stdlib libpython2-dbg libpython2-stdlib > libpython2.7-dbg libpython2.7-minimal libpython2.7-stdlib libquadmath0 > libsz2 mime-support python python-all python-all-dbg python-dbg python-h5py > python-h5py-dbg python-minimal python-numpy python-numpy-dbg python-six > python2 python2-dbg python2-minimal python2.7 python2.7-dbg > python2.7-minimal > 0 upgraded, 32 newly installed, 0 to remove and 0 not upgraded. > 1 not fully installed or removed. > Need to get 38.4 MB of archives. > After this operation, 133 MB of additional disk space will be used. > Get:1 http://deb.debian.org/debian unstable/main amd64 libpython2.7-minimal > amd64 2.7.15-3 [393 kB] > Get:2 http://deb.debian.org/debian unstable/main amd64 python2.7-minimal > amd64 2.7.15-3 [1,358 kB] > Get:3 http://deb.debian.org/debian unstable/main amd64 python2-minimal amd64 > 2.7.15-3 [41.3 kB] > Get:4 http://deb.debian.org/debian unstable/main amd64 python-minimal amd64 > 2.7.15-3 [20.9 kB] > Get:5 http://deb.debian.org/debian unstable/main amd64 mime-support all 3.61 > [37.1 kB] > Get:6 http://deb.debian.org/debian unstable/main amd64 libpython2.7-stdlib > amd64 2.7.15-3 [1,904 kB] > Get:7 http://deb.debian.org/debian unstable/main amd64 python2.7 amd64 > 2.7.15-3 [298 kB] > Get:8 http://deb.debian.org/debian unstable/main amd64 libpython2-stdlib > amd64 2.7.15-3 [20.7 kB] > Get:9 http://deb.debian.org/debian unstable/main amd64 libpython-stdlib amd64 > 2.7.15-3 [20.7 kB] > Get:10 http://deb.debian.org/debian unstable/main amd64 python2 amd64 > 2.7.15-3 [41.5 kB] > Get:11 http://deb.debian.org/debian unstable/main amd64 python amd64 2.7.15-3 > [22.7 kB] > Get:12 http://deb.debian.org/debian unstable/main amd64 python-all amd64 > 2.7.15-3 [1,044 B] > Get:13 http://deb.debian.org/debian unstable/main amd64 libpython2.7-dbg > amd64 2.7.15-3 [4,889 kB] > Get:14 http://deb.debian.org/debian unstable/main amd64 libpython2-dbg amd64 > 2.7.15-3 [20.8 kB] > Get:15 http://deb.debian.org/debian unstable/main amd64 libpython-dbg amd64 > 2.7.15-3 [20.7 kB] > Get:16 http://deb.debian.org/debian unstable/main amd64 libpython-all-dbg > amd64 2.7.15-3 [1,184 B] > Get:17 http://deb.debian.org/debian unstable/main amd64 python2.7-dbg amd64 > 2.7.15-3 [9,536 kB] > Get:18 http://deb.debian.org/debian unstable/main amd64 python2-dbg amd64 > 2.7.15-3 [1,268 B] > Get:19 http://deb.debian.org/debian unstable/main amd64 python-dbg amd64 > 2.7.15-3 [1,252 B] > Get:20 http://deb.debian.org/debian unstable/main amd64 python-all-dbg amd64 > 2.7.15-3 [1,068 B] > Get:21 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 > 8.2.0-3 [133 kB] > Get:22 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 > 8.2.0-3 [583 kB] > Get:23 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 > 3.8.0-1+b1 [148 kB] > Get:24 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 > 3.8.0-1+b1 [2,112 kB] > Get:25 http://deb.debian.org/debian unstable/main amd64 python-numpy amd64 > 1:1.14.5-1+b1 [2,005 kB] > Get:26 http://deb.debian.org/debian unstable/main amd64 python-six all > 1.11.0-2 [15.1 kB] > Get:27 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.0.2-1 > [20.1 kB] > Get:28 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.0.2-1 > [6,676 B] > Get:29 http://deb.debian.org/debian unstable/main amd64 libhdf5-100 amd64 > 1.10.0-patch1+docs-4+b2 [1,266 kB] > Get:30 http://deb.debian.org/debian unstable/main amd64 python-h5py amd64 > 2.7.1-2 [683 kB] > Get:31 http://deb.debian.org/debian unstable/main amd64 python-numpy-dbg > amd64 1:1.14.5-1+b1 [8,059 kB] > Get:32 http://deb.debian.org/debian unstable/main amd64 python-h5py-dbg amd64 > 2.7.1-2 [4,762 kB] > debconf: delaying package configuration, since apt-utils is not installed > Fetched 38.4 MB in 0s (125 MB/s) > Selecting previously unselected package libpython2.7-minimal:amd64. > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../0-libpython2.7-minimal_2.7.15-3_amd64.deb ... > Unpacking libpython2.7-minimal:amd64 (2.7.15-3) ... > Selecting previously unselected package python2.7-minimal. > Preparing to unpack .../1-python2.7-minimal_2.7.15-3_amd64.deb ... > Unpacking python2.7-minimal (2.7.15-3) ... > Selecting previously unselected package python2-minimal. > Preparing to unpack .../2-python2-minimal_2.7.15-3_amd64.deb ... > Unpacking python2-minimal (2.7.15-3) ... > Selecting previously unselected package python-minimal. > Preparing to unpack .../3-python-minimal_2.7.15-3_amd64.deb ... > Unpacking python-minimal (2.7.15-3) ... > Selecting previously unselected package mime-support. > Preparing to unpack .../4-mime-support_3.61_all.deb ... > Unpacking mime-support (3.61) ... > Selecting previously unselected package libpython2.7-stdlib:amd64. > Preparing to unpack .../5-libpython2.7-stdlib_2.7.15-3_amd64.deb ... > Unpacking libpython2.7-stdlib:amd64 (2.7.15-3) ... > Selecting previously unselected package python2.7. > Preparing to unpack .../6-python2.7_2.7.15-3_amd64.deb ... > Unpacking python2.7 (2.7.15-3) ... > Selecting previously unselected package libpython2-stdlib:amd64. > Preparing to unpack .../7-libpython2-stdlib_2.7.15-3_amd64.deb ... > Unpacking libpython2-stdlib:amd64 (2.7.15-3) ... > Selecting previously unselected package libpython-stdlib:amd64. > Preparing to unpack .../8-libpython-stdlib_2.7.15-3_amd64.deb ... > Unpacking libpython-stdlib:amd64 (2.7.15-3) ... > Setting up libpython2.7-minimal:amd64 (2.7.15-3) ... > Setting up python2.7-minimal (2.7.15-3) ... > Setting up python2-minimal (2.7.15-3) ... > Selecting previously unselected package python2. > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database 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... > Setting up libaec0:amd64 (1.0.2-1) ... > Setting up mime-support (3.61) ... > Processing triggers for libc-bin (2.27-5) ... > Setting up libgfortran5:amd64 (8.2.0-3) ... > Setting up libpython2.7-stdlib:amd64 (2.7.15-3) ... > Setting up libsz2:amd64 (1.0.2-1) ... > Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4+b2) ... > Setting up python2.7 (2.7.15-3) ... > Setting up libpython2.7-dbg:amd64 (2.7.15-3) ... > Setting up libblas3:amd64 (3.8.0-1+b1) ... > update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to > provide /usr/lib/x86_64-linux-gnu/libblas.so.3 > (libblas.so.3-x86_64-linux-gnu) in auto mode > Setting up python2.7-dbg (2.7.15-3) ... > Setting up libpython2-stdlib:amd64 (2.7.15-3) ... > Setting up liblapack3:amd64 (3.8.0-1+b1) ... > update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to > provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 > (liblapack.so.3-x86_64-linux-gnu) in auto mode > Setting up libpython2-dbg:amd64 (2.7.15-3) ... > Setting up python2 (2.7.15-3) ... > Setting up libpython-stdlib:amd64 (2.7.15-3) ... > Setting up libpython-dbg:amd64 (2.7.15-3) ... > Setting up libpython-all-dbg:amd64 (2.7.15-3) ... > Setting up python (2.7.15-3) ... > Setting up python2-dbg (2.7.15-3) ... > Setting up python-numpy (1:1.14.5-1+b1) ... > Setting up python-six (1.11.0-2) ... > Setting up python-dbg (2.7.15-3) ... > Setting up python-all (2.7.15-3) ... > Setting up python-h5py (2.7.1-2) ... > Setting up python-numpy-dbg:amd64 (1:1.14.5-1+b1) ... > Setting up python-all-dbg (2.7.15-3) ... > Setting up python-h5py-dbg (2.7.1-2) ... > Setting up autopkgtest-satdep (0) ... > Processing triggers for libc-bin (2.27-5) ... > (Reading database ... 13867 files and directories currently installed.) > Removing autopkgtest-satdep (0) ... > autopkgtest [13:27:37]: test command1: set -e ; for py in $(pyversions -r > 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c > "import h5py; h5py.run_tests()" ; echo "Testing with $py-dbg:" ; $py-dbg -c > "import h5py; h5py.run_tests()" ; done > autopkgtest [13:27:37]: test command1: [----------------------- > Testing with python2.7: > /usr/lib/python2.7/dist-packages/h5py/__init__.py:36: FutureWarning: > Conversion of the second argument of issubdtype from `float` to `np.floating` > is deprecated. In future, it will be treated as `np.float64 == > np.dtype(float).type`. > from ._conv import register_converters as _register_converters > .....................................................x...................................................................x....................................s...s......ss.....................ss...................................................................................sss...........................F..................................x....x........................x.....x.................................................ssss.........F.... > ====================================================================== > FAIL: test_out_of_order_offsets (h5py.tests.old.test_h5t.TestCompound) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/h5py/tests/old/test_h5t.py", line > 61, in test_out_of_order_offsets > self.assertEqual(tid.dtype, expected_dtype) > AssertionError: dtype({'names':['f1','f3','f2'], > 'formats':['<f4','<f8','<i4'], 'offsets':[0,8,16], 'itemsize':20}) != > dtype({'names':['f1','f2','f3'], 'formats':['<f4','<i4','<f8'], > 'offsets':[0,16,8], 'itemsize':20}) > > ====================================================================== > FAIL: test_out_of_order_offsets (h5py.tests.hl.test_datatype.TestOffsets) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/h5py/tests/hl/test_datatype.py", > line 198, in test_out_of_order_offsets > self.assertArrayEqual(fd['data'], data) > File "/usr/lib/python2.7/dist-packages/h5py/tests/common.py", line 124, in > assertArrayEqual > "Dtype mismatch (%s vs %s)%s" % (dset.dtype, arr.dtype, message) > AssertionError: Dtype mismatch ({'names':['f1','f3','f2'], > 'formats':['<f4','<f8','<i4'], 'offsets':[0,8,16], 'itemsize':20} vs > {'names':['f1','f2','f3'], 'formats':['<f4','<i4','<f8'], 'offsets':[0,16,8], > 'itemsize':20}) > > ---------------------------------------------------------------------- > Ran 446 tests in 0.617s > > FAILED (failures=2, skipped=13, expected failures=6) > Testing with python2.7-dbg: > /usr/lib/python2.7/dist-packages/h5py/__init__.py:36: FutureWarning: > Conversion of the second argument of issubdtype from `float` to `np.floating` > is deprecated. In future, it will be treated as `np.float64 == > np.dtype(float).type`. > from ._conv import register_converters as _register_converters > .....................................................x...................................................................x....................................s...s......ss.....................ss...................................................................................sss...........................F..................................x....x........................x.....x.................................................ssss.........F.... > ====================================================================== > FAIL: test_out_of_order_offsets (h5py.tests.old.test_h5t.TestCompound) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/h5py/tests/old/test_h5t.py", line > 61, in test_out_of_order_offsets > self.assertEqual(tid.dtype, expected_dtype) > AssertionError: dtype({'names':['f1','f3','f2'], > 'formats':['<f4','<f8','<i4'], 'offsets':[0,8,16], 'itemsize':20}) != > dtype({'names':['f1','f2','f3'], 'formats':['<f4','<i4','<f8'], > 'offsets':[0,16,8], 'itemsize':20}) > > ====================================================================== > FAIL: test_out_of_order_offsets (h5py.tests.hl.test_datatype.TestOffsets) > ---------------------------------------------------------------------- > Traceback (most recent call last): > File "/usr/lib/python2.7/dist-packages/h5py/tests/hl/test_datatype.py", > line 198, in test_out_of_order_offsets > self.assertArrayEqual(fd['data'], data) > File "/usr/lib/python2.7/dist-packages/h5py/tests/common.py", line 124, in > assertArrayEqual > "Dtype mismatch (%s vs %s)%s" % (dset.dtype, arr.dtype, message) > AssertionError: Dtype mismatch ({'names':['f1','f3','f2'], > 'formats':['<f4','<f8','<i4'], 'offsets':[0,8,16], 'itemsize':20} vs > {'names':['f1','f2','f3'], 'formats':['<f4','<i4','<f8'], 'offsets':[0,16,8], > 'itemsize':20}) > > ---------------------------------------------------------------------- > Ran 446 tests in 0.896s > > FAILED (failures=2, skipped=13, expected failures=6) > autopkgtest [13:27:39]: test command1: -----------------------] > autopkgtest [13:27:39]: test command1: - - - - - - - - - - results - - - - - > - - - - - > command1 PASS > autopkgtest [13:27:39]: test command2: preparing testbed > autopkgtest [13:27:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup > Get:1 http://deb.debian.org/debian unstable InRelease [233 kB] > Get:2 http://deb.debian.org/debian unstable/non-free Sources.diff/Index [27.8 > kB] > Get:3 http://deb.debian.org/debian unstable/main Sources.diff/Index [27.9 kB] > Get:4 http://deb.debian.org/debian unstable/main amd64 Packages.diff/Index > [27.9 kB] > Get:5 http://deb.debian.org/debian unstable/contrib amd64 Packages.diff/Index > [27.8 kB] > Get:6 http://deb.debian.org/debian unstable/non-free Sources > 2018-08-03-2013.11.pdiff [1,306 B] > Get:7 http://deb.debian.org/debian unstable/non-free Sources > 2018-08-04-0814.44.pdiff [665 B] > Get:8 http://deb.debian.org/debian unstable/main Sources > 2018-08-02-1416.04.pdiff [5,521 B] > Get:9 http://deb.debian.org/debian unstable/main Sources > 2018-08-02-2015.39.pdiff [10.3 kB] > Get:10 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-0208.52.pdiff [3,145 B] > Get:11 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-0811.08.pdiff [15.6 kB] > Get:12 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-1408.50.pdiff [39.5 kB] > Get:13 http://deb.debian.org/debian unstable/main Sources > 2018-08-03-2013.11.pdiff [8,876 B] > Get:14 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-0211.02.pdiff [5,928 B] > Get:15 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-0814.44.pdiff [11.7 kB] > Get:16 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-1411.17.pdiff [12.2 kB] > Get:7 http://deb.debian.org/debian unstable/non-free Sources > 2018-08-04-0814.44.pdiff [665 B] > Get:16 http://deb.debian.org/debian unstable/main Sources > 2018-08-04-1411.17.pdiff [12.2 kB] > Get:17 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-02-1416.04.pdiff [27.6 kB] > Get:18 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-02-2015.39.pdiff [16.0 kB] > Get:19 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-0208.52.pdiff [2,583 B] > Get:20 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-0811.08.pdiff [13.7 kB] > Get:21 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-1408.50.pdiff [43.3 kB] > Get:22 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-03-2013.11.pdiff [33.6 kB] > Get:23 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-0211.02.pdiff [4,425 B] > Get:24 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-0814.44.pdiff [20.5 kB] > Get:25 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-1411.17.pdiff [9,739 B] > Get:26 http://deb.debian.org/debian unstable/contrib amd64 Packages > 2018-08-04-0211.02.pdiff [460 B] > Get:26 http://deb.debian.org/debian unstable/contrib amd64 Packages > 2018-08-04-0211.02.pdiff [460 B] > Get:25 http://deb.debian.org/debian unstable/main amd64 Packages > 2018-08-04-1411.17.pdiff [9,739 B] > Get:27 http://incoming.debian.org/debian-buildd buildd-unstable InRelease > [55.3 kB] > Get:28 http://incoming.debian.org/debian-buildd buildd-unstable/main Sources > [111 kB] > Get:29 http://incoming.debian.org/debian-buildd buildd-unstable/main amd64 > Packages [153 kB] > Fetched 950 kB in 1s (958 kB/s) > Reading package lists... > Reading package lists... > Building dependency tree... > Reading state information... > Calculating upgrade... > The following packages will be upgraded: > bsdutils dbus fdisk gcc-8-base libblkid1 libdbus-1-3 libfdisk1 libgcc1 > libmount1 libpcre3 libsmartcols1 libstdc++6 libuuid1 make mount util-linux > 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. > Need to get 4,013 kB of archives. > After this operation, 38.9 kB of additional disk space will be used. > Get:1 http://deb.debian.org/debian unstable/main amd64 bsdutils amd64 > 1:2.32-0.4 [117 kB] > Get:2 http://deb.debian.org/debian unstable/main amd64 libuuid1 amd64 > 2.32-0.4 [77.6 kB] > Get:3 http://deb.debian.org/debian unstable/main amd64 libblkid1 amd64 > 2.32-0.4 [190 kB] > Get:4 http://deb.debian.org/debian unstable/main amd64 libfdisk1 amd64 > 2.32-0.4 [229 kB] > Get:5 http://deb.debian.org/debian unstable/main amd64 libmount1 amd64 > 2.32-0.4 [201 kB] > Get:6 http://deb.debian.org/debian unstable/main amd64 libsmartcols1 amd64 > 2.32-0.4 [146 kB] > Get:7 http://deb.debian.org/debian unstable/main amd64 fdisk amd64 2.32-0.4 > [168 kB] > Get:8 http://deb.debian.org/debian unstable/main amd64 util-linux amd64 > 2.32-0.4 [974 kB] > Get:9 http://deb.debian.org/debian unstable/main amd64 mount amd64 2.32-0.4 > [164 kB] > Get:10 http://deb.debian.org/debian unstable/main amd64 gcc-8-base amd64 > 8.2.0-3 [186 kB] > Get:11 http://deb.debian.org/debian unstable/main amd64 libstdc++6 amd64 > 8.2.0-3 [393 kB] > Get:12 http://deb.debian.org/debian unstable/main amd64 libgcc1 amd64 > 1:8.2.0-3 [40.7 kB] > Get:13 http://deb.debian.org/debian unstable/main amd64 libpcre3 amd64 > 2:8.39-11 [341 kB] > Get:14 http://deb.debian.org/debian unstable/main amd64 dbus amd64 1.12.10-1 > [233 kB] > Get:15 http://deb.debian.org/debian unstable/main amd64 libdbus-1-3 amd64 > 1.12.10-1 [211 kB] > Get:16 http://deb.debian.org/debian unstable/main amd64 make amd64 4.2.1-1.2 > [341 kB] > debconf: delaying package configuration, since apt-utils is not installed > Fetched 4,013 kB in 0s (96.0 MB/s) > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../bsdutils_1%3a2.32-0.4_amd64.deb ... > Unpacking bsdutils (1:2.32-0.4) over (1:2.32-0.3) ... > Setting up bsdutils (1:2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > 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database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libblkid1_2.32-0.4_amd64.deb ... > Unpacking libblkid1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libblkid1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libfdisk1_2.32-0.4_amd64.deb ... > Unpacking libfdisk1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libfdisk1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libmount1_2.32-0.4_amd64.deb ... > Unpacking libmount1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libmount1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libsmartcols1_2.32-0.4_amd64.deb ... > Unpacking libsmartcols1:amd64 (2.32-0.4) over (2.32-0.3) ... > Setting up libsmartcols1:amd64 (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../fdisk_2.32-0.4_amd64.deb ... > Unpacking fdisk (2.32-0.4) over (2.32-0.3) ... > Setting up fdisk (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../util-linux_2.32-0.4_amd64.deb ... > Unpacking util-linux (2.32-0.4) over (2.32-0.3) ... > Setting up util-linux (2.32-0.4) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../mount_2.32-0.4_amd64.deb ... > Unpacking mount (2.32-0.4) over (2.32-0.3) ... > Preparing to unpack .../gcc-8-base_8.2.0-3_amd64.deb ... > Unpacking gcc-8-base:amd64 (8.2.0-3) over (8.2.0-1) ... > Setting up gcc-8-base:amd64 (8.2.0-3) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libstdc++6_8.2.0-3_amd64.deb ... > Unpacking libstdc++6:amd64 (8.2.0-3) over (8.2.0-1) ... > Setting up libstdc++6:amd64 (8.2.0-3) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libgcc1_1%3a8.2.0-3_amd64.deb ... > Unpacking libgcc1:amd64 (1:8.2.0-3) over (1:8.2.0-1) ... > Setting up libgcc1:amd64 (1:8.2.0-3) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../libpcre3_2%3a8.39-11_amd64.deb ... > Unpacking libpcre3:amd64 (2:8.39-11) over (2:8.39-10) ... > Setting up libpcre3:amd64 (2:8.39-11) ... > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../dbus_1.12.10-1_amd64.deb ... > Unpacking dbus (1.12.10-1) over (1.12.8-3) ... > Preparing to unpack .../libdbus-1-3_1.12.10-1_amd64.deb ... > Unpacking libdbus-1-3:amd64 (1.12.10-1) over (1.12.8-3) ... > Preparing to unpack .../make_4.2.1-1.2_amd64.deb ... > Unpacking make (4.2.1-1.2) over (4.2.1-1.1) ... > Setting up make (4.2.1-1.2) ... > Setting up mount (2.32-0.4) ... > Processing triggers for libc-bin (2.27-5) ... > Processing triggers for systemd (239-7) ... > Setting up libdbus-1-3:amd64 (1.12.10-1) ... > Setting up dbus (1.12.10-1) ... > A reboot is required to replace the running dbus-daemon. > Please reboot the system when convenient. > Processing triggers for libc-bin (2.27-5) ... > autopkgtest [13:27:58]: rebooting testbed after setup commands that affected > boot > autopkgtest [13:28:11]: testbed dpkg architecture: amd64 > Reading package lists... > Building dependency tree... > Reading state information... > Correcting dependencies...Starting pkgProblemResolver with broken count: 0 > Starting 2 pkgProblemResolver with broken count: 0 > Done > Done > Starting pkgProblemResolver with broken count: 0 > Starting 2 pkgProblemResolver with broken count: 0 > Done > The following additional packages will be installed: > dh-python libaec0 libblas3 libgfortran5 libhdf5-100 liblapack3 libmpdec2 > libpython3-all-dbg libpython3-dbg libpython3-stdlib libpython3.6-dbg > libpython3.6-stdlib libpython3.7-dbg libpython3.7-minimal > libpython3.7-stdlib libquadmath0 libsz2 mime-support python3 python3-all > python3-all-dbg python3-dbg python3-distutils python3-h5py python3-h5py-dbg > python3-lib2to3 python3-numpy python3-numpy-dbg python3-six python3.6 > python3.6-dbg python3.7 python3.7-dbg python3.7-minimal > Suggested packages: > python3-doc python3-tk python3-venv python-h5py-doc gcc gfortran > python-numpy-doc python3-dev python3-nose python3.6-venv python3.6-doc > python3-gdbm-dbg python3-tk-dbg python3.7-venv python3.7-doc binfmt-support > Recommended packages: > file gdb > The following NEW packages will be installed: > dh-python libaec0 libblas3 libgfortran5 libhdf5-100 liblapack3 libmpdec2 > libpython3-all-dbg libpython3-dbg libpython3-stdlib libpython3.6-dbg > libpython3.6-stdlib libpython3.7-dbg libpython3.7-minimal > libpython3.7-stdlib libquadmath0 libsz2 mime-support python3 python3-all > python3-all-dbg python3-dbg python3-distutils python3-h5py python3-h5py-dbg > python3-lib2to3 python3-numpy python3-numpy-dbg python3-six python3.6 > python3.6-dbg python3.7 python3.7-dbg python3.7-minimal > 0 upgraded, 34 newly installed, 0 to remove and 0 not upgraded. > 1 not fully installed or removed. > Need to get 104 MB of archives. > After this operation, 357 MB of additional disk space will be used. > Get:1 http://deb.debian.org/debian unstable/main amd64 mime-support all 3.61 > [37.1 kB] > Get:2 http://deb.debian.org/debian unstable/main amd64 libmpdec2 amd64 > 2.4.2-2 [87.2 kB] > Get:3 http://deb.debian.org/debian unstable/main amd64 libpython3.6-stdlib > amd64 3.6.6-1 [1,709 kB] > Get:4 http://deb.debian.org/debian unstable/main amd64 python3.6 amd64 > 3.6.6-1 [234 kB] > Get:5 http://deb.debian.org/debian unstable/main amd64 libpython3-stdlib > amd64 3.6.6-1 [19.8 kB] > Get:6 http://deb.debian.org/debian unstable/main amd64 python3 amd64 3.6.6-1 > [47.5 kB] > Get:7 http://deb.debian.org/debian unstable/main amd64 python3-lib2to3 all > 3.6.6-1 [79.1 kB] > Get:8 http://deb.debian.org/debian unstable/main amd64 python3-distutils all > 3.6.6-1 [144 kB] > Get:9 http://deb.debian.org/debian unstable/main amd64 dh-python all > 3.20180723 [94.2 kB] > Get:10 http://deb.debian.org/debian unstable/main amd64 libpython3.7-minimal > amd64 3.7.0-4 [590 kB] > Get:11 http://deb.debian.org/debian unstable/main amd64 python3.7-minimal > amd64 3.7.0-4 [1,727 kB] > Get:12 http://deb.debian.org/debian unstable/main amd64 libpython3.7-stdlib > amd64 3.7.0-4 [1,733 kB] > Get:13 http://deb.debian.org/debian unstable/main amd64 python3.7 amd64 > 3.7.0-4 [309 kB] > Get:14 http://deb.debian.org/debian unstable/main amd64 python3-all amd64 > 3.6.6-1 [1,060 B] > Get:15 http://deb.debian.org/debian unstable/main amd64 libpython3.6-dbg > amd64 3.6.6-1 [10.8 MB] > Get:16 http://deb.debian.org/debian unstable/main amd64 libpython3-dbg amd64 > 3.6.6-1 [19.8 kB] > Get:17 http://deb.debian.org/debian unstable/main amd64 libpython3.7-dbg > amd64 3.7.0-4 [11.6 MB] > Get:18 http://deb.debian.org/debian unstable/main amd64 libpython3-all-dbg > amd64 3.6.6-1 [1,064 B] > Get:19 http://deb.debian.org/debian unstable/main amd64 python3.6-dbg amd64 > 3.6.6-1 [14.9 MB] > Get:20 http://deb.debian.org/debian unstable/main amd64 python3-dbg amd64 > 3.6.6-1 [1,292 B] > Get:21 http://deb.debian.org/debian unstable/main amd64 python3.7-dbg amd64 > 3.7.0-4 [16.1 MB] > Get:22 http://deb.debian.org/debian unstable/main amd64 python3-all-dbg amd64 > 3.6.6-1 [1,068 B] > Get:23 http://deb.debian.org/debian unstable/main amd64 libquadmath0 amd64 > 8.2.0-3 [133 kB] > Get:24 http://deb.debian.org/debian unstable/main amd64 libgfortran5 amd64 > 8.2.0-3 [583 kB] > Get:25 http://deb.debian.org/debian unstable/main amd64 libblas3 amd64 > 3.8.0-1+b1 [148 kB] > Get:26 http://deb.debian.org/debian unstable/main amd64 liblapack3 amd64 > 3.8.0-1+b1 [2,112 kB] > Get:27 http://deb.debian.org/debian unstable/main amd64 python3-numpy amd64 > 1:1.14.5-1+b1 [2,216 kB] > Get:28 http://deb.debian.org/debian unstable/main amd64 python3-six all > 1.11.0-2 [15.2 kB] > Get:29 http://deb.debian.org/debian unstable/main amd64 libaec0 amd64 1.0.2-1 > [20.1 kB] > Get:30 http://deb.debian.org/debian unstable/main amd64 libsz2 amd64 1.0.2-1 > [6,676 B] > Get:31 http://deb.debian.org/debian unstable/main amd64 libhdf5-100 amd64 > 1.10.0-patch1+docs-4+b2 [1,266 kB] > Get:32 http://deb.debian.org/debian unstable/main amd64 python3-h5py amd64 > 2.7.1-2 [1,020 kB] > Get:33 http://deb.debian.org/debian unstable/main amd64 python3-numpy-dbg > amd64 1:1.14.5-1+b1 [26.2 MB] > Get:34 http://deb.debian.org/debian unstable/main amd64 python3-h5py-dbg > amd64 2.7.1-2 [10.2 MB] > debconf: delaying package configuration, since apt-utils is not installed > Fetched 104 MB in 16s (6,614 kB/s) > Selecting previously unselected package mime-support. > (Reading database ... > (Reading database ... 5% > (Reading database ... 10% > (Reading database ... 15% > (Reading database ... 20% > (Reading database ... 25% > (Reading database ... 30% > (Reading database ... 35% > (Reading database ... 40% > (Reading database ... 45% > (Reading database ... 50% > (Reading database ... 55% > (Reading database ... 60% > (Reading database ... 65% > (Reading database ... 70% > (Reading database ... 75% > (Reading database ... 80% > (Reading database ... 85% > (Reading database ... 90% > (Reading database ... 95% > (Reading database ... 100% > (Reading database ... 12101 files and directories currently installed.) > Preparing to unpack .../00-mime-support_3.61_all.deb ... > Unpacking mime-support (3.61) ... > Selecting previously unselected package libmpdec2:amd64. > Preparing to unpack .../01-libmpdec2_2.4.2-2_amd64.deb ... > Unpacking libmpdec2:amd64 (2.4.2-2) ... > Selecting previously unselected package libpython3.6-stdlib:amd64. > Preparing to unpack .../02-libpython3.6-stdlib_3.6.6-1_amd64.deb ... > Unpacking libpython3.6-stdlib:amd64 (3.6.6-1) ... > Selecting previously unselected package python3.6. > Preparing to unpack .../03-python3.6_3.6.6-1_amd64.deb ... > Unpacking python3.6 (3.6.6-1) ... > Selecting previously unselected package libpython3-stdlib:amd64. > Preparing to unpack .../04-libpython3-stdlib_3.6.6-1_amd64.deb ... > Unpacking libpython3-stdlib:amd64 (3.6.6-1) ... > Selecting previously unselected package python3. > Preparing to unpack .../05-python3_3.6.6-1_amd64.deb ... > Unpacking python3 (3.6.6-1) ... > Selecting previously unselected package python3-lib2to3. > Preparing to unpack .../06-python3-lib2to3_3.6.6-1_all.deb ... > Unpacking python3-lib2to3 (3.6.6-1) ... > Selecting previously unselected package python3-distutils. > Preparing to unpack .../07-python3-distutils_3.6.6-1_all.deb ... > Unpacking python3-distutils (3.6.6-1) ... > Selecting previously unselected package dh-python. > Preparing to unpack .../08-dh-python_3.20180723_all.deb ... > Unpacking dh-python (3.20180723) ... > Selecting previously unselected package libpython3.7-minimal:amd64. > Preparing to unpack .../09-libpython3.7-minimal_3.7.0-4_amd64.deb ... > Unpacking libpython3.7-minimal:amd64 (3.7.0-4) ... > Selecting previously unselected package python3.7-minimal. > Preparing to unpack .../10-python3.7-minimal_3.7.0-4_amd64.deb ... > Unpacking python3.7-minimal (3.7.0-4) ... > Selecting previously unselected package libpython3.7-stdlib:amd64. > Preparing to unpack .../11-libpython3.7-stdlib_3.7.0-4_amd64.deb ... > Unpacking libpython3.7-stdlib:amd64 (3.7.0-4) ... > Selecting previously unselected package python3.7. > Preparing to unpack .../12-python3.7_3.7.0-4_amd64.deb ... > Unpacking python3.7 (3.7.0-4) ... > Selecting previously unselected package python3-all. > Preparing to unpack .../13-python3-all_3.6.6-1_amd64.deb ... > Unpacking python3-all (3.6.6-1) ... > Selecting previously unselected package libpython3.6-dbg:amd64. > Preparing to unpack .../14-libpython3.6-dbg_3.6.6-1_amd64.deb ... > Unpacking libpython3.6-dbg:amd64 (3.6.6-1) ... > Selecting previously unselected package 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python3-numpy-dbg:amd64 (1:1.14.5-1+b1) ... > Selecting previously unselected package python3-h5py-dbg. > Preparing to unpack .../33-python3-h5py-dbg_2.7.1-2_amd64.deb ... > Unpacking python3-h5py-dbg (2.7.1-2) ... > Setting up libquadmath0:amd64 (8.2.0-3) ... > Setting up libaec0:amd64 (1.0.2-1) ... > Setting up mime-support (3.61) ... > Setting up libpython3.7-minimal:amd64 (3.7.0-4) ... > Setting up python3.7-minimal (3.7.0-4) ... > Processing triggers for libc-bin (2.27-5) ... > Setting up libgfortran5:amd64 (8.2.0-3) ... > Setting up libmpdec2:amd64 (2.4.2-2) ... > Setting up libsz2:amd64 (1.0.2-1) ... > Setting up libpython3.6-stdlib:amd64 (3.6.6-1) ... > Setting up libpython3.7-stdlib:amd64 (3.7.0-4) ... > Setting up python3.6 (3.6.6-1) ... > Setting up libhdf5-100:amd64 (1.10.0-patch1+docs-4+b2) ... > Setting up python3.7 (3.7.0-4) ... > Setting up libpython3.7-dbg:amd64 (3.7.0-4) ... > Setting up libblas3:amd64 (3.8.0-1+b1) ... > update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to > provide /usr/lib/x86_64-linux-gnu/libblas.so.3 > (libblas.so.3-x86_64-linux-gnu) in auto mode > Setting up python3.7-dbg (3.7.0-4) ... > Setting up libpython3.6-dbg:amd64 (3.6.6-1) ... > Setting up libpython3-stdlib:amd64 (3.6.6-1) ... > Setting up python3 (3.6.6-1) ... > Setting up liblapack3:amd64 (3.8.0-1+b1) ... > update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to > provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 > (liblapack.so.3-x86_64-linux-gnu) in auto mode > Setting up python3-six (1.11.0-2) ... > Setting up python3.6-dbg (3.6.6-1) ... > Setting up libpython3-dbg:amd64 (3.6.6-1) ... > Setting up libpython3-all-dbg:amd64 (3.6.6-1) ... > Setting up python3-dbg (3.6.6-1) ... > Setting up python3-lib2to3 (3.6.6-1) ... > Setting up python3-distutils (3.6.6-1) ... > Setting up python3-numpy (1:1.14.5-1+b1) ... > Setting up dh-python (3.20180723) ... > Setting up python3-h5py (2.7.1-2) ... > Setting up python3-numpy-dbg:amd64 (1:1.14.5-1+b1) ... > Setting up python3-h5py-dbg (2.7.1-2) ... > Setting up python3-all (3.6.6-1) ... > Setting up python3-all-dbg (3.6.6-1) ... > Setting up autopkgtest-satdep (0) ... > Processing triggers for libc-bin (2.27-5) ... > (Reading database ... 14834 files and directories currently installed.) > Removing autopkgtest-satdep (0) ... > autopkgtest [13:28:40]: test command2: set -e ; for py in $(py3versions -r > 2>/dev/null) ; do cd "$AUTOPKGTEST_TMP" ; echo "Testing with $py:" ; $py -c > "import h5py; h5py.run_tests()" ; echo "Testing with $py-dbg:" ; $py-dbg -c > "import h5py; h5py.run_tests()" ; done > autopkgtest [13:28:40]: test command2: [----------------------- > Testing with python3.7: > Traceback (most recent call last): > File "<string>", line 1, in <module> > File "/usr/lib/python3/dist-packages/h5py/__init__.py", line 26, in <module> > from . import _errors > ImportError: cannot import name '_errors' from 'h5py' > (/usr/lib/python3/dist-packages/h5py/__init__.py) > autopkgtest [13:28:40]: test command2: -----------------------] > autopkgtest [13:28:40]: test command2: - - - - - - - - - - results - - - - - > - - - - - > command2 FAIL non-zero exit status 1 > autopkgtest [13:28:40]: @@@@@@@@@@@@@@@@@@@@ summary > command1 PASS > command2 FAIL non-zero exit status 1
