Your message dated Sat, 18 Aug 2018 06:19:35 +0000 with message-id <[email protected]> and subject line Bug#906481: fixed in libfastahack 0.0+git20160702.bbc645f+dfsg-2 has caused the Debian Bug report #906481, regarding libfastahack: FTBFS in buster/sid (ld: cannot find -lfastahack) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 906481: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906481 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:libfastahack Version: 0.0+20160702-1 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch --with autoreconf dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. [... snipped ...] checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 15957: AX_CXXFLAGS: command not found checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libfastahack.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702' (CDPATH="${ZSH_VERSION+.}:" && cd . && /bin/bash /<<BUILDDIR>>/libfastahack-0.0+20160702/config/missing autoheader) rm -f stamp-h1 touch config.h.in cd . && /bin/bash ./config.status config.h config.status: creating config.h config.status: config.h is unchanged make all-am make[2]: Entering directory '/<<BUILDDIR>>/libfastahack-0.0+20160702' g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-0.0+20160702=. -fstack-protector-strong -Wformat -Werror=format-security -c -o FastaHack.o FastaHack.cpp /bin/bash ./libtool --tag=CXX --mode=link g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-0.0+20160702=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fastahack FastaHack.o -lfastahack -ldisorder libtool: link: g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/libfastahack-0.0+20160702=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o fastahack FastaHack.o -lfastahack -ldisorder /usr/bin/ld: cannot find -lfastahack collect2: error: ld returned 1 exit status make[2]: *** [Makefile:530: fastahack] Error 1 make[2]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702' make[1]: *** [Makefile:386: all] Error 2 make[1]: Leaving directory '/<<BUILDDIR>>/libfastahack-0.0+20160702' dh_auto_build: make -j1 returned exit code 2 make: *** [debian/rules:11: build-arch] Error 2 dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made with "dpkg-buildpackage -B" in my autobuilder. Most probably, it also fails here in reproducible builds: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libfastahack.html where you can get a full build log if you need it. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Source: libfastahack Source-Version: 0.0+git20160702.bbc645f+dfsg-2 We believe that the bug you reported is fixed in the latest version of libfastahack, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <[email protected]> (supplier of updated libfastahack package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 18 Aug 2018 07:54:07 +0200 Source: libfastahack Binary: libfastahack0 libfastahack-dev fastahack Architecture: source Version: 0.0+git20160702.bbc645f+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Andreas Tille <[email protected]> Description: fastahack - utility for indexing and sequence extraction from FASTA files libfastahack-dev - library for indexing and sequence extraction from FASTA files (de libfastahack0 - library for indexing and sequence extraction from FASTA files (li Closes: 906481 Changes: libfastahack (0.0+git20160702.bbc645f+dfsg-2) unstable; urgency=medium . [ Adrian Bunk ] * Fix Makefile.am Closes: #906481 . [ Andreas Tille ] * Standards-Version: 4.2.0 * d/rules: Drop --no-parallel * drop +dfsg from symbols file Checksums-Sha1: e8ecc28265dcc7141e2a3f6a4413299d02014b50 2273 libfastahack_0.0+git20160702.bbc645f+dfsg-2.dsc fdbe4fc7d96c778b01c436f4db783de673290e43 5624 libfastahack_0.0+git20160702.bbc645f+dfsg-2.debian.tar.xz Checksums-Sha256: c91065a4467a2689a859b383718140cef6b4dddaa45bdfdd9ec99b0a7821f73c 2273 libfastahack_0.0+git20160702.bbc645f+dfsg-2.dsc a8c0160cbdcf68117fdaecc6265c79056c3e31223c1570594de8589e3d46edda 5624 libfastahack_0.0+git20160702.bbc645f+dfsg-2.debian.tar.xz Files: 4dac7acca70d4e18671742523f0707bf 2273 science optional libfastahack_0.0+git20160702.bbc645f+dfsg-2.dsc 35b666a797e66869a728bad8c8128f36 5624 science optional libfastahack_0.0+git20160702.bbc645f+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt3tXgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG71w/5AcJaAg1CvSNcE8SM7esTGsoLGvGH3yqI pKaLEjEmjYXAdyl14VRQZv4nn6uNC8N3QEWDQ9KXPKB6q+///Z4OKEpijG0tHUjM hGpwot8Hhm1qlhyIx1qCzBCYc5ia2qhAWHX+gEehOu6yGZ+Uc95sh4xesL9YhFzU 5OhWRVqbz0C9GVZ+6XgjGxFZtVaeRxkKVePgjZQroSS9NqtiHigqpORTmqwguM/+ WTH9k4ZWEYRMz0qnpGoNgNkRtxA2NsfURIVXTLDRxWPJtakDLG5/gwVp17yc30ix IJVKXI04P91QofWiLywVpWBD3cRh10VWAPJC+XPG4OYT14ZMqv1PKbnqIM86mNRL hn3PK3+cnMpBneZyOsZcNCg/2ThSIiQ6h1yY9rhuMFxMGWFMKcyz3Bv/T0/wOcMM d4q2JVlWiIozIwLzrMGbyPyeWxoFcciJTs3llJHEJeI7iwIZCJ0q8G/e4rlmgbhL AoY5okoSQ2l3AAJg4C3Kt1KLPwGmx4PSHKKTdyLASzMmIMzuyQ38K+pTmZ+6Ad88 TpPPxupuzCAOC+LpkWT9z+1qzXuWaBRiENAgyLrVX0cq7l8pJCyTdnLC0bgTuuRr fA2ch1S6RmBtETEYtHcpG45cqEMvX5tM6+2s6O9UdROtsr7e5UJUdbUHctjuO66y x/5X/sQ7FU4= =Jv2O -----END PGP SIGNATURE-----
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