Your message dated Wed, 22 Aug 2018 20:57:50 +0000 with message-id <[email protected]> and subject line Bug#906478: fixed in libbpp-phyl 2.4.1-1 has caused the Debian Bug report #906478, regarding libbpp-phyl: FTBFS in buster/sid (dh_makeshlibs fails) to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 906478: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=906478 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Package: src:libbpp-phyl Version: 2.4.0-2 Severity: serious Tags: ftbfs Dear maintainer: I tried to build this package in buster but it failed: -------------------------------------------------------------------------------- [...] debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" .. -- The CXX compiler identification is GNU 8.2.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- bpp-core 4.0.0 found: [... snipped ...] _ZNSt8_Rb_treeImSt4pairIKmSt6vectorIiSaIiEEESt10_Select1stIS5_ESt4lessImESaIS5_EE7_M_copyINSB_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS5_EPKSF_PSt18_Rb_tree_node_baseRT_@Base 2.4.0 @@ -4817,6 +4883,7 @@ _ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.0 _ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.0 _ZNSt8_Rb_treeImSt4pairIKmiESt10_Select1stIS2_ESt4lessImESaIS2_EE8_M_eraseEPSt13_Rb_tree_nodeIS2_E@Base 2.4.0 + _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESD_IJEEEEESt17_Rb_tree_iteratorIS2_ESt23_Rb_tree_const_iteratorIS2_EDpOT_@Base 2.4.0-2 _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE24_M_get_insert_unique_posERS1_@Base 2.4.0 _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS2_ERS1_@Base 2.4.0 _ZNSt8_Rb_treeImSt4pairIKmmESt10_Select1stIS2_ESt4lessImESaIS2_EE7_M_copyINS8_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS2_EPKSC_PSt18_Rb_tree_node_baseRT_@Base 2.4.0 @@ -4848,15 +4915,21 @@ _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops15_Iter_less_iterEEvT_SF_T0_@Base 2.4.0 _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base 2.4.0 _ZSt16__insertion_sortIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base 2.4.0 + _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPdSt6vectorIdSaIdEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base 2.4.0-2 + _ZSt16__introsort_loopIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEElNS0_5__ops15_Iter_less_iterEEvT_S9_T0_T1_@Base 2.4.0-2 + _ZSt22__final_insertion_sortIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops15_Iter_less_iterEEvT_S9_T0_@Base 2.4.0-2 _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 2.4.0 _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN3bpp12SitePatterns12SortableSiteESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 2.4.0 - _ZSt4fillSt13_Bit_iteratorS_RKb@Base 2.4.0 - _ZSt4findIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEES4_ET_SA_SA_RKT0_@Base 2.4.0 + _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZSt4fillSt13_Bit_iteratorS_RKb@Base 2.4.0 +#MISSING: 2.4.0-2# _ZSt4findIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEES4_ET_SA_SA_RKT0_@Base 2.4.0 _ZSt4swapI12StringAndIntENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS5_ESt18is_move_assignableIS5_EEE5valueEvE4typeERS5_SF_@Base 2.4.0 _ZSt5fixedRSt8ios_base@Base 2.4.0 _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops16_Iter_equals_valIKS7_EEET_SH_SH_T0_St26random_access_iterator_tag@Base 2.4.0 _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp19TreeDrawingListenerESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base 2.4.0 - _ZSteqINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEbRKSt6vectorIT_T0_ESC_@Base 2.4.0 + _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base 2.4.0-2 + _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops16_Iter_equals_valIKiEEET_SB_SB_T0_St26random_access_iterator_tag@Base 2.4.0-2 +#MISSING: 2.4.0-2# _ZSteqINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEbRKSt6vectorIT_T0_ESC_@Base 2.4.0 _ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base 2.4.0 _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 2.4.0 _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_RKS8_@Base 2.4.0 @@ -8080,6 +8153,7 @@ _ZTv0_n24_N3bpp16BranchLikelihoodD1Ev@Base 2.4.0 _ZTv0_n24_N3bpp16GCFrequenciesSetD0Ev@Base 2.4.0 _ZTv0_n24_N3bpp16GCFrequenciesSetD1Ev@Base 2.4.0 + _ZTv0_n24_N3bpp17BrentOneDimensionD0Ev@Base 2.4.0-2 _ZTv0_n24_N3bpp17CanonicalStateMapD0Ev@Base 2.4.0 _ZTv0_n24_N3bpp17CanonicalStateMapD1Ev@Base 2.4.0 _ZTv0_n24_N3bpp17MvaFrequenciesSetD0Ev@Base 2.4.0 dh_makeshlibs: failing due to earlier errors make[1]: *** [debian/rules:15: override_dh_makeshlibs] Error 2 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:10: binary-arch] Error 2 dpkg-buildpackage: error: fakeroot debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- The build was made with "dpkg-buildpackage -B" in my autobuilder. Most probably, it also fails here in reproducible builds: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/libbpp-phyl.html where you can get a full build log if you need it. If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks.
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--- Begin Message ---Source: libbpp-phyl Source-Version: 2.4.1-1 We believe that the bug you reported is fixed in the latest version of libbpp-phyl, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Julien Dutheil <[email protected]> (supplier of updated libbpp-phyl package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sun, 19 Aug 2018 21:36:23 +0200 Source: libbpp-phyl Binary: libbpp-phyl-dev libbpp-phyl12 Architecture: source Version: 2.4.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Julien Dutheil <[email protected]> Description: libbpp-phyl-dev - Bio++ Phylogenetic library development files libbpp-phyl12 - Bio++ Phylogenetic library Closes: 906478 Changes: libbpp-phyl (2.4.1-1) unstable; urgency=medium . [ Julien Dutheil ] * New upstream update. Closes: #906478 . [ Andreas Tille ] * Standards-Version: 4.2.0 Checksums-Sha1: 05eaed663d5fdbc9f4564796c6cd8ee4f4def2ea 2149 libbpp-phyl_2.4.1-1.dsc fe6808b427b667d4d2609e887dad9f571771a1d2 600392 libbpp-phyl_2.4.1.orig.tar.gz c1a668f9cb5dd4a07775f1c862151bbca6ee6777 56308 libbpp-phyl_2.4.1-1.debian.tar.xz Checksums-Sha256: b22908a71db5d31f6c1644b8d75c810688530583658a69707cafe9fd1715f6a0 2149 libbpp-phyl_2.4.1-1.dsc e7bf7d4570f756b7773904ffa600ffcd77c965553ddb5cbc252092d1da962ff2 600392 libbpp-phyl_2.4.1.orig.tar.gz 1a2003ada72a9b8701dc9bff3f749ccf3f6ab64f1f1873591eeaa3e52ab2a1ce 56308 libbpp-phyl_2.4.1-1.debian.tar.xz Files: 8b99f13c7a1c7638e1944911a90f4e3e 2149 science optional libbpp-phyl_2.4.1-1.dsc 05c58ac05a1f7525888df2b04c4a800c 600392 science optional libbpp-phyl_2.4.1.orig.tar.gz 01ee6fe589b5e88c86a2e8d5cfae81dc 56308 science optional libbpp-phyl_2.4.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt9wucOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtEKJg/+OeSro3PweK5bTszIyGySquYdvxiIVSSfUJZD VI7ZctrnI0FQaBC5T/yf07IZ5EayMYkwhfbyYBMuezOumw4Up29hku+xiWKJNcN9 1T4s3vAhMiRDClJznV/KCbLxJS/i9XXEXu1D4xPQo31kZ58O4SSIZFGhF9wr6t9u e9Qlygn+h8pmxFpeMProL8z5SsA+cCm8mdSnxfclaWwK/gkFDVgIPZUxmx1zBp/K XmdZhC3sCrKDUiiK35XWnTGa6cFCWD/cmqWmMtxR/dkgRS/6hv/paWU5Vg8Yb8wh rGkPFD1//86ZRANziuDQAFx+cON/TsWTKeCbiyRadvkFVdtXimJvYwrM1RKcbp/1 oHosq9Orshenu3bGgt1yqdXvJw+2xfLfZrGXU4CB6QNmhd0SOX7RMNPfRSchkhmx qKN9WrUmywlamE4Rt6kUYn3rzHXdRzYRgEsOq5J4/y19ue0QcSa/ScHz/YzbhtHH KHfr+z0V/SjUonsjzDB5Ee/VEkvkhgaUMuFt4vUsB0La1rj4MCHlT1/3Vfkl2ifI l4kTkIRCNCAU+83PFik3g4palGmQZxb/huLCr/+kvl2sMGGeyWAIAOvmZ3VJ4k3i UOy0TEGGBk2MyhHx/7jmI/bj3la+2JNMB2Zk3Y9AIRrsfe5O4oTQYy/8hURaMStS SA5fFQE= =F3e2 -----END PGP SIGNATURE-----
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