Your message dated Mon, 22 Oct 2018 18:13:15 +0300 with message-id <20181022151211.GA25395@localhost> and subject line Re: Bug#908615: pyfai: FTBFS and autopkgtest fails with python3.7 in supported versions has caused the Debian Bug report #908615, regarding pyfai: FTBFS and autopkgtest fails with python3.7 in supported versions to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 908615: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=908615 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: pyfai Version: 0.15.0+dfsg1-1 Severity: serious Tags: ftbfs User: debian...@lists.debian.org Usertags: needs-update Control: affects -1 src:python3-defaults [X-Debbugs-CC set to: debian...@lists.debian.org, python3-defau...@packages.debian.org] Dear maintainers, Since the python3.7 transition started (which added python3.7 to the supported Python versions) the autopkgtest of pyfai fails in testing when that autopkgtest is run with the binary packages of python3-defaults from unstable. It passes when run with only packages from testing. I copied some of the output at the bottom of this report. It seems that this failure also causes the package to FTBFS on reproducible builds: https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/pyfai.html If this is a real problem in your package (and not only in your autopkgtest), the right binary package(s) from python3-defaults should really add a versioned Breaks on the unfixed version of (one of your) package(s). Note: the Breaks is nice even if the issue is only in the autopkgtest as it helps the migration software to figure out the right versions to combine in the tests. More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=python3-defaults https://ci.debian.net/data/autopkgtest/testing/amd64/p/pyfai/972161/log.gz autopkgtest [05:07:40]: test python3: [----------------------- === python3.7 === Unable to import pyFAI.ext.splitBBoxLUT for Look-up table based azimuthal integration Unable to import pyFAI.ext.splitPixel full pixel splitting: cannot import name 'splitPixel' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.splitBBox Bounding Box pixel splitting: cannot import name 'splitBBox' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.histogram Cython histogram implementation: cannot import name 'histogram' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.splitBBoxCSR CSR based azimuthal integration: cannot import name 'splitBBoxCSR' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.splitPixelFullCSR CSR based azimuthal integration: cannot import name 'splitPixelFullCSR' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Traceback (most recent call last): File "<string>", line 1, in <module> File "/usr/lib/python3/dist-packages/pyFAI/__init__.py", line 73, in tests res = test.run_tests() File "/usr/lib/python3/dist-packages/pyFAI/test/__init__.py", line 59, in run_tests if not runner.run(suite()).wasSuccessful(): File "/usr/lib/python3/dist-packages/pyFAI/test/__init__.py", line 50, in suite from . import test_all File "/usr/lib/python3/dist-packages/pyFAI/test/test_all.py", line 47, in <module> from . import test_histogram File "/usr/lib/python3/dist-packages/pyFAI/test/test_histogram.py", line 45, in <module> from ..ext.histogram import histogram, histogram2d ModuleNotFoundError: No module named 'pyFAI.ext.histogram' autopkgtest [05:07:41]: test python3: -----------------------] autopkgtest [05:10:47]: test python3-dbg: [----------------------- === python3.7 === /usr/lib/python3.7/importlib/_bootstrap.py:219: ImportWarning: can't resolve package from __spec__ or __package__, falling back on __name__ and __path__ return f(*args, **kwds) /usr/lib/python3/dist-packages/h5py/_hl/base.py:19: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working from collections import (Mapping, MutableMapping, KeysView, /usr/lib/python3.7/importlib/_bootstrap.py:219: ImportWarning: can't resolve package from __spec__ or __package__, falling back on __name__ and __path__ return f(*args, **kwds) Unable to import pyFAI.ext.splitBBoxLUT for Look-up table based azimuthal integration Unable to import pyFAI.ext.splitPixel full pixel splitting: cannot import name 'splitPixel' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.splitBBox Bounding Box pixel splitting: cannot import name 'splitBBox' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.histogram Cython histogram implementation: cannot import name 'histogram' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.splitBBoxCSR CSR based azimuthal integration: cannot import name 'splitBBoxCSR' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) Unable to import pyFAI.ext.splitPixelFullCSR CSR based azimuthal integration: cannot import name 'splitPixelFullCSR' from 'pyFAI.ext' (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) /usr/lib/python3/dist-packages/pkg_resources/_vendor/pyparsing.py:3245: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated, and in 3.8 it will stop working elif isinstance( exprs, collections.Iterable ): Traceback (most recent call last): File "<string>", line 1, in <module> File "/usr/lib/python3/dist-packages/pyFAI/__init__.py", line 73, in tests res = test.run_tests() File "/usr/lib/python3/dist-packages/pyFAI/test/__init__.py", line 59, in run_tests if not runner.run(suite()).wasSuccessful(): File "/usr/lib/python3/dist-packages/pyFAI/test/__init__.py", line 50, in suite from . import test_all File "/usr/lib/python3/dist-packages/pyFAI/test/test_all.py", line 47, in <module> from . import test_histogram File "/usr/lib/python3/dist-packages/pyFAI/test/test_histogram.py", line 45, in <module> from ..ext.histogram import histogram, histogram2d ModuleNotFoundError: No module named 'pyFAI.ext.histogram' * ob object : <refcnt 0 at 0x7f91283390c8> type : tuple refcount: 0 address : 0x7f91283390c8 * op->_ob_prev->_ob_next object : <refcnt 0 at 0x7f91283390c7>Segmentation fault autopkgtest [05:10:48]: test python3-dbg: -----------------------] From the reproducible build log: FAILED (failures=1, skipped=84) WARNING:run_tests:Skipped pyFAI.test.test_average.TestAverageMonitorName.test_edf_file_key (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_average.TestAverageMonitorName.test_edf_file_motor (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_geometry_refinement.TestGeometryRefinement.test_Spline (tests geometric refinements with spline): network unreachable. WARNING:run_tests:Skipped setUpClass (pyFAI.test.test_azimuthal_integrator.TestAzimHalfFrelon) (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_azimuthal_integrator.TestSaxs.test_inpainting (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_azimuthal_integrator.TestSaxs.test_mask (test the generation of mask): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_azimuthal_integrator.TestSaxs.test_normalization_factor (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_azimuthal_integrator.TestSaxs.test_variance (tests the different variance model available): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_peak_picking.TestPeakPicking.test_peakPicking (first test peak-picking then checks the geometry found is OK): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_geometry.TestSolidAngle.testSolidAngle (): skipping test using >400M WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMask.test_mask_CSR (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMask.test_mask_CSR_OCL (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMask.test_mask_LUT (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMask.test_mask_LUT_OCL (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMask.test_mask_hist (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMask.test_mask_splitBBox (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMask.test_mask_splitfull (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMaskBeamstop.test_mask_LUT (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMaskBeamstop.test_mask_LUT_OCL (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMaskBeamstop.test_mask_splitBBox (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMaskBeamstop.test_nomask (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMaskBeamstop.test_nomask_LUT (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_mask.TestMaskBeamstop.test_nomask_LUT_OCL (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestMask.test_OpenCL (): test using >200M WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestMask.test_OpenCL_CSR (): test using >200M WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestMask.test_OpenCL_LUT (): test using >500M WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestSort.test_reference_book (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestSort.test_reference_file (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestSort.test_sort_all (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestSort.test_sort_horizontal (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_openCL.TestSort.test_sort_vertical (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_export.TestFIT2D.test_export (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_export.TestFIT2D.test_simple (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_export.TestSPD.test_simple (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_saxs.TestSaxs.testCython (): skipping test using >100M WARNING:run_tests:Skipped pyFAI.test.test_saxs.TestSaxs.testMask (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_saxs.TestSaxs.testNumpy (): test using >100Mb WARNING:run_tests:Skipped pyFAI.test.test_saxs.TestSaxs.testSplitBBox (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_saxs.TestSaxs.testSplitPixel (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate.TestIntegrate1D.test2th (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate.TestIntegrate1D.testQ (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate.TestIntegrate1D.testR (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate.TestIntegrate1D.test_defaultwriter (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate.TestIntegrate1D.test_filename (): network unreachable. WARNING:run_tests:Skipped setUpClass (pyFAI.test.test_integrate.TestIntegrate2D) (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_app.TestIntegrateApp.test_integrate_counter_monitor (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_app.TestIntegrateApp.test_integrate_default_output_azim (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_app.TestIntegrateApp.test_integrate_default_output_dat (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_app.TestIntegrateApp.test_integrate_file_output_dat (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_app.TestIntegrateApp.test_integrate_monitor (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_app.TestIntegrateApp.test_integrate_no_monitor (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_distortion.TestImplementations.test_calc_pos (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_distortion.TestImplementations.test_size (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_distortion.TestImplementations.test_lut (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_distortion.TestHalfCCD.test_pos_lut (): skipping test using >100M WARNING:run_tests:Skipped pyFAI.test.test_distortion.TestHalfCCD.test_ref_vs_fit2d (Compare reference spline correction vs fit2d's code): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_distortion.TestHalfCCD.test_lut_vs_fit2d (Compare reference spline correction vs fit2d's code): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_distortion.TestHalfCCD.test_csr_vs_fit2d (Compare reference spline correction vs fit2d's code): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_sparse.TestSparseBBox.test_CSR (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_sparse.TestSparseBBox.test_LUT (): network unreachable. WARNING:run_tests:Skipped setUpClass (pyFAI.test.test_csr.TestCSR) (): network unreachable. WARNING:run_tests:Skipped setUpClass (pyFAI.test.test_csr.TestOpenClCSR) (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_bispev.TestBispev.test_bispev (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_bug_regression.TestBug170.test_bug170 (): test using >100Mb WARNING:run_tests:Skipped pyFAI.test.test_bug_regression.TestBugRegression.test_bug_174 (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_watershed.TestWatershed.test_init (): network unreachable. WARNING:run_tests:Skipped setUpClass (pyFAI.test.test_multi_geometry.TestMultiGeometry) (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_filter_hor (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_filter_vert (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_mean_hor (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_mean_vert (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_sigma_clip_hor (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_sigma_clip_vert (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_sort_hor (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_ocl_sort.TestOclSort.test_sort_vert (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_integrate_widget.TestAIWidget.test_process_array_1d (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_widget.TestAIWidget.test_process_array_2d (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_widget.TestAIWidget.test_process_no_data (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_widget.TestAIWidget.test_process_numpy_1d (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_integrate_widget.TestAIWidget.test_process_numpy_2d (): network unreachable. WARNING:run_tests:Skipped pyFAI.test.test_preproc.TestPreproc.test_opencl (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.test.test_spline.TestSpline.test_tilt_coverage (): network unreachable. WARNING:run_tests:Skipped pyFAI.opencl.test.test_addition.TestAddition.test_add (): User request to skip OpenCL tests WARNING:run_tests:Skipped pyFAI.opencl.test.test_addition.TestAddition.test_measurement (): User request to skip OpenCL tests WARNING:run_tests:Test suite failed numpy 1.14.5 from ['/usr/lib/python3/dist-packages/numpy'] Scipy 1.1.0 from ['/usr/lib/python3/dist-packages/scipy'] FabIO 0.7.0 h5py 2.8.0 Cython 0.28.4 * ob object : <refcnt 0 at 0x7fc29a89fbb8> type : tuple refcount: 0 address : 0x7fc29a89fbb8 * op->_ob_prev->_ob_next object : <refcnt 0 at 0x7fc29a89fbb7>Segmentation fault E: pybuild pybuild:338: test: plugin custom failed with: exit code=139: PYTHONPATH=/build/1st/pyfai-0.15.0+dfsg1/.pybuild/cpython3_3.7_dbg_pyfai/build http_proxy='127.0.0.1:9' PYFAI_TESTIMAGES=testimages PYFAI_DATA=/build/1st/pyfai-0.15.0+dfsg1 xvfb-run -a --server-args="-screen 0 1024x768x24" python3.7-dbg ./run_tests.py --low-mem --no-opencl --installed
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--- Begin Message ---On Tue, Sep 11, 2018 at 09:31:26PM +0200, Paul Gevers wrote: >... > > autopkgtest [05:07:40]: test python3: [----------------------- > === python3.7 === > Unable to import pyFAI.ext.splitBBoxLUT for Look-up table based > azimuthal integration > Unable to import pyFAI.ext.splitPixel full pixel splitting: cannot > import name 'splitPixel' from 'pyFAI.ext' > (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) > Unable to import pyFAI.ext.splitBBox Bounding Box pixel splitting: > cannot import name 'splitBBox' from 'pyFAI.ext' > (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) > Unable to import pyFAI.ext.histogram Cython histogram implementation: > cannot import name 'histogram' from 'pyFAI.ext' > (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) > Unable to import pyFAI.ext.splitBBoxCSR CSR based azimuthal integration: > cannot import name 'splitBBoxCSR' from 'pyFAI.ext' > (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) > Unable to import pyFAI.ext.splitPixelFullCSR CSR based azimuthal > integration: cannot import name 'splitPixelFullCSR' from 'pyFAI.ext' > (/usr/lib/python3/dist-packages/pyFAI/ext/__init__.py) > Traceback (most recent call last): > File "<string>", line 1, in <module> > File "/usr/lib/python3/dist-packages/pyFAI/__init__.py", line 73, in tests > res = test.run_tests() > File "/usr/lib/python3/dist-packages/pyFAI/test/__init__.py", line 59, > in run_tests > if not runner.run(suite()).wasSuccessful(): > File "/usr/lib/python3/dist-packages/pyFAI/test/__init__.py", line 50, > in suite > from . import test_all > File "/usr/lib/python3/dist-packages/pyFAI/test/test_all.py", line 47, > in <module> > from . import test_histogram > File "/usr/lib/python3/dist-packages/pyFAI/test/test_histogram.py", > line 45, in <module> > from ..ext.histogram import histogram, histogram2d > ModuleNotFoundError: No module named 'pyFAI.ext.histogram' >... This worked again after everything had been binNMUed for python3.7: https://ci.debian.net/packages/p/pyfai/unstable/amd64/ cu Adrian -- "Is there not promise of rain?" Ling Tan asked suddenly out of the darkness. There had been need of rain for many days. "Only a promise," Lao Er said. Pearl S. Buck - Dragon Seed
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