Your message dated Thu, 13 Dec 2018 03:49:33 +0000 with message-id <[email protected]> and subject line Bug#916000: fixed in ncbi-blast+ 2.7.1-2 has caused the Debian Bug report #916000, regarding ncbi-blast+: FTBFS - Makefile.flat: No such file or directory to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact [email protected] immediately.) -- 916000: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=916000 Debian Bug Tracking System Contact [email protected] with problems
--- Begin Message ---Source: ncbi-blast+ Version: 2.7.1-1 Severity: serious Justification: fails to build from source Hello, ncbi-blast+ FTBFS on current sid: LIBRARIES: build as dynamic by default FEATURES: GCC MT LFS DLL DLL_BUILD unix WinMain Linux PACKAGES: enabled: Iconv Z BZ2 PCRE MBEDTLS GMP GMP NETTLE NETTLE GNUTLS Boost.Spirit Boost.Test.Included LMDB LocalLMDB disabled: UUID FUSE LIBUNWIND LocalZ LocalBZ2 LZO LocalPCRE GCRYPT OPENSSL KRB5 CURL Sybase DBLib FreeTDS MySQL BerkeleyDB BerkeleyDB++ ODBC PYTHON PYTHON25 PYTHON26 PYTHON27 PYTHON3 PERL Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.System Boost.Test Boost.Thread C-Toolkit OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus ICU EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB OECHEM SGE MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF XPM FreeType FTGL MAGIC MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 GMOCK LAPACK LIBUV LIBSSH2 CASSANDRA LIBXLSXWRITER GRPC PROJECTS: enabled: cgi serial objects app algo disabled: local_lbsm connext ncbi_crypt bdb dbapi ctools gui gbench Tools / flags / paths: /tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build/Makefile.mk Configuration header: /tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/inc/ncbiconf_unix.h To build everything: cd /tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build && /usr/bin/make all_r or simply run /usr/bin/make in the current directory ******* CONFIGURATION SUCCESSFUL ******* make[1]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/tmp/MODGNU/ncbi-blast+-2.7.1' cd c++/BUILD/build && \ make -j5 -f Makefile.flat all_projects="algo/blast/ app/ objmgr/ objtools/align_format/ objtools/blast/" make[2]: Entering directory '/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build' make[2]: warning: -j5 forced in submake: resetting jobserver mode. make[2]: Makefile.flat: No such file or directory make[2]: *** No rule to make target 'Makefile.flat'. Stop. make[2]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1/c++/BUILD/build' make[1]: *** [debian/rules:56: override_dh_auto_build-arch] Error 2 make[1]: Leaving directory '/tmp/MODGNU/ncbi-blast+-2.7.1' make: *** [debian/rules:129: build-arch] Error 2
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--- Begin Message ---Source: ncbi-blast+ Source-Version: 2.7.1-2 We believe that the bug you reported is fixed in the latest version of ncbi-blast+, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to [email protected], and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Aaron M. Ucko <[email protected]> (supplier of updated ncbi-blast+ package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing [email protected]) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Wed, 12 Dec 2018 22:24:45 -0500 Source: ncbi-blast+ Binary: ncbi-blast+ ncbi-blast+-legacy blast2 Architecture: source Version: 2.7.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <[email protected]> Changed-By: Aaron M. Ucko <[email protected]> Description: blast2 - transitional dummy package to ncbi-blast+-legacy ncbi-blast+ - next generation suite of BLAST sequence search tools ncbi-blast+-legacy - NCBI Blast legacy call script Closes: 916000 Changes: ncbi-blast+ (2.7.1-2) unstable; urgency=medium . [ David Miguel Susano Pinto ] * d/control: fix Vcs-* links to point to salsa . [ Aaron M. Ucko ] * d/control: Standards-Version: 4.2.1 (already compliant). * d/patches/support_boost_1_67: New patch to extend Boost support (used for uninstalled tests) through at least version 1.67, per upstream (https://www.ncbi.nlm.nih.gov/viewvc/v1/trunk/c%2B%2B) revisions 79910, 79926, 79928, and 79929. (Closes: #916000.) Checksums-Sha1: d2796c5240a12bc008adee757cc237ea543235d4 2304 ncbi-blast+_2.7.1-2.dsc c0d91a46be5c5987757472a79471f71928e31c2c 29428 ncbi-blast+_2.7.1-2.debian.tar.xz d004ba887717b145db1cb8d2a4345c690a88c464 9707 ncbi-blast+_2.7.1-2_source.buildinfo Checksums-Sha256: 88fa99677a85dbe8ed5634e980e72750b6f8004dbb4fe0f06344db2e64de8a87 2304 ncbi-blast+_2.7.1-2.dsc 392414e70e0c4e0387bf1764547fa1ea04862a95f76cc3f7123b75d786fef17c 29428 ncbi-blast+_2.7.1-2.debian.tar.xz 8757333b882051d019259b8f4de8f68753471d75ab0533ac0b34814ac35a4a67 9707 ncbi-blast+_2.7.1-2_source.buildinfo Files: 07be042c004fe9d9361540975d49b455 2304 science optional ncbi-blast+_2.7.1-2.dsc a609aafb8576d31f67377a06b59a6e37 29428 science optional ncbi-blast+_2.7.1-2.debian.tar.xz b7735c9e8c282c2f65bd804578432d3d 9707 science optional ncbi-blast+_2.7.1-2_source.buildinfo -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAlwR0bEACgkQHnCRsfFK ZKJngA//WFKEE+kFT3lLFL1uhcZQgGnrRfLkwzka+p+lsznMU2svYEzgpw36kPfd ZIw8xTeqCbVgtoED+p4ZEgb5/k+2n/W+heutpQJtDUQFPtyBYNaVc/bQMV32mJ+K rGPBdww9fbRf/fvghiGv7kS5RPElPmvvn4enzWuay+6tEJTMrkqeuwrHsy8ZFGh7 M4hqStUyC9deFlTk39hJRy7Iai6JK4x6Elkls8wU+aJ/Ey3PkClzXSivMI6+kR6n 3fDQ0iR0fRAR6RIRVhMaHcnUkHWdSfRIYlCoBxn5J1h7smb7OWPNXT4XarT2xKMr FrPrzHhpU+eHkT+28suI8YhM6SmE0kKbmC3lJdT0BmeKQoNk+py0Y0K7cLwOtVuc XzOoBrqINwvpkpfcTiTJB7SRlCMruz+fpXkriRQTy1rBxd3lvs8/hUp6+bv6Sa0m 8xbmYbAYLueWQz967AxJlhDTr+TxuRigZBK97wYpcygwDiR5odjK3IZl9AEvt1Rv ZyBhGpmVNn02B15xfx+5zocIQxH+pZ1+MMSieZUGuLn4AjCswvgq66trSUVURqFO 7sm/z49VQNMjFmqKAoXgSlWEvw3l+pWok2SolIN0gme5yKHYO9I5VqvA28wSLx5M VVELwR4kkMeQVqEUynnhLmZpfwsYtQWJDY1x+fyNfX4EKt2AaMk= =KmIi -----END PGP SIGNATURE-----
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