Your message dated Tue, 18 Dec 2018 09:04:53 +0000 with message-id <e1gzbj7-0002ij...@fasolo.debian.org> and subject line Bug#916706: fixed in python-cobra 0.14.1-1 has caused the Debian Bug report #916706, regarding python-cobra FTBFS with python-pip 18.1 to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 916706: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=916706 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-cobra Version: 0.13.4-2 Severity: serious Tags: ftbfs https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/python-cobra.html ... ============================= test session starts ============================== platform linux -- Python 3.6.8rc1, pytest-3.10.1, py-1.7.0, pluggy-0.8.0 benchmark: 3.1.1 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/1st/python-cobra-0.13.4, inifile: setup.cfg plugins: benchmark-3.1.1 collected 0 items / 1 errors ==================================== ERRORS ==================================== ______________________________ ERROR collecting _______________________________ /usr/lib/python3/dist-packages/_pytest/config/__init__.py:430: in _importconftest return self._conftestpath2mod[conftestpath] E KeyError: local('/build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/test/conftest.py') During handling of the above exception, another exception occurred: /usr/lib/python3/dist-packages/pipdeptree.py:17: in <module> from pip._internal import get_installed_distributions E ImportError: cannot import name 'get_installed_distributions' During handling of the above exception, another exception occurred: /usr/lib/python3/dist-packages/_pytest/config/__init__.py:436: in _importconftest mod = conftestpath.pyimport() /usr/lib/python3/dist-packages/py/_path/local.py:668: in pyimport __import__(modname) cobra/__init__.py:11: in <module> from cobra import flux_analysis, io cobra/flux_analysis/__init__.py:3: in <module> from cobra.flux_analysis.gapfilling import gapfill cobra/flux_analysis/gapfilling.py:8: in <module> from cobra.core import Model cobra/core/__init__.py:6: in <module> from cobra.core.gene import Gene cobra/core/gene.py:13: in <module> from cobra.util import resettable cobra/util/__init__.py:7: in <module> from cobra.util.util import * cobra/util/util.py:5: in <module> from depinfo import print_dependencies /usr/lib/python3/dist-packages/depinfo/__init__.py:27: in <module> from depinfo.info import * /usr/lib/python3/dist-packages/depinfo/info.py:24: in <module> from pipdeptree import build_dist_index, construct_tree /usr/lib/python3/dist-packages/pipdeptree.py:20: in <module> from pip import get_installed_distributions, FrozenRequirement E ImportError: cannot import name 'get_installed_distributions' During handling of the above exception, another exception occurred: /usr/lib/python3/dist-packages/py/_path/common.py:377: in visit for x in Visitor(fil, rec, ignore, bf, sort).gen(self): /usr/lib/python3/dist-packages/py/_path/common.py:429: in gen for p in self.gen(subdir): /usr/lib/python3/dist-packages/py/_path/common.py:418: in gen dirs = self.optsort([p for p in entries /usr/lib/python3/dist-packages/py/_path/common.py:419: in <listcomp> if p.check(dir=1) and (rec is None or rec(p))]) /usr/lib/python3/dist-packages/_pytest/main.py:601: in _recurse ihook = self.gethookproxy(dirpath) /usr/lib/python3/dist-packages/_pytest/main.py:418: in gethookproxy my_conftestmodules = pm._getconftestmodules(fspath) /usr/lib/python3/dist-packages/_pytest/config/__init__.py:414: in _getconftestmodules mod = self._importconftest(conftestpath) /usr/lib/python3/dist-packages/_pytest/config/__init__.py:453: in _importconftest raise ConftestImportFailure(conftestpath, sys.exc_info()) E _pytest.config.ConftestImportFailure: (local('/build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/test/conftest.py'), (<class 'ImportError'>, ImportError("cannot import name 'get_installed_distributions'",), <traceback object at 0x7f6136b65bc8>)) =============================== warnings summary =============================== cobra/flux_analysis/gapfilling.py:83 /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/flux_analysis/gapfilling.py:83: DeprecationWarning: invalid escape sequence \s """ cobra/core/gene.py:248 /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/core/gene.py:248: DeprecationWarning: invalid escape sequence \( the_gene_re = re.compile('(^|(?<=( |\()))%s(?=( |\)|$))' % cobra/core/gene.py:262 /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build/cobra/core/gene.py:262: DeprecationWarning: invalid escape sequence \( other_gene_re = re.compile('(^|(?<=( |\()))%s(?=( |\)|$))' % /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49: DeprecationWarning: invalid escape sequence \[ /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50: DeprecationWarning: invalid escape sequence \] /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:49: DeprecationWarning: invalid escape sequence \[ /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50 /usr/share/python-wheels/colorama-0.3.7-py2.py3-none-any.whl/colorama/ansitowin32.py:50: DeprecationWarning: invalid escape sequence \] -- Docs: https://docs.pytest.org/en/latest/warnings.html !!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection !!!!!!!!!!!!!!!!!!!! ===================== 7 warnings, 1 error in 12.40 seconds ===================== E: pybuild pybuild:338: test: plugin distutils failed with: exit code=2: cd /build/1st/python-cobra-0.13.4/.pybuild/cpython3_3.6_cobra/build; python3.6 -m pytest dh_auto_test: pybuild --test --test-pytest -i python{version} -p "3.6 3.7" returned exit code 13 make: *** [debian/rules:10: build] Error 25
--- End Message ---
--- Begin Message ---Source: python-cobra Source-Version: 0.14.1-1 We believe that the bug you reported is fixed in the latest version of python-cobra, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 916...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated python-cobra package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Tue, 18 Dec 2018 09:42:44 +0100 Source: python-cobra Binary: python3-cobra python-cobra-data Architecture: source Version: 0.14.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Description: python-cobra-data - constraint-based modeling of biological networks (data) python3-cobra - constraint-based modeling of biological networks with Python 3 Closes: 916706 Changes: python-cobra (0.14.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Versioned Depends: python3-pipdeptree (>= 0.13.1) (see https://github.com/opencobra/cobrapy/issues/780) Closes: #916706 * Add missing Recommends and Test-Depends Checksums-Sha1: 81e2c496caa67acaa676365b4deff5b141b546b3 2460 python-cobra_0.14.1-1.dsc a56635818b4da7c308cdd30793f5102f76e2e24a 1767342 python-cobra_0.14.1.orig.tar.gz 40594d0353db67315467058f172dad823a8a2a39 5856 python-cobra_0.14.1-1.debian.tar.xz Checksums-Sha256: c096b42b7951dcc49efcc9f7faeb406efef80c5535d00146ba5a257b2bc0db08 2460 python-cobra_0.14.1-1.dsc 6166c7edf23cb07d8e9d2d923d3548a04b0bb3ace970d22ed6b158d3c9c7a507 1767342 python-cobra_0.14.1.orig.tar.gz f20281eaeefd38b24ec768c85e131798028c821130d44ab1e838158fd5ff5dbb 5856 python-cobra_0.14.1-1.debian.tar.xz Files: 6b6568a09f3e1d7cdef6318e6fe67772 2460 python optional python-cobra_0.14.1-1.dsc 5b91dbc18ed26dbe4f50b2bf6005365e 1767342 python optional python-cobra_0.14.1.orig.tar.gz e166427ead3db499694482fd38acab4c 5856 python optional python-cobra_0.14.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwYtNsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFTkQ//cCQHC9Dp0WfYJZ5Cmt83s9/vKPqhxnm3 DR8c9QA0oVPyIgt2KTOK7Es1Cj2EtHvpSAd9CcVjXU3McAcmHZ7IxXb9IEXJLSmk k0xzJrbF7ufqYZyEIla2MthBF9GDCVnyidv6tGJeY+ZbKgcG6u7YTjDMydFyeYof aIBcK6P7T19DbZt/lHlAoJqMBbustVSXZHWeWz/29KFkdom5xt+RgH2TZiEl2bi6 tGJmS+ZyT75Vv54blyU7fBZa7ef6tWKrk/LdCS5vci5IgLXt13Nmciuc2mGwaGC5 YpPVk0Ac7ID/X5qIR6JuIkuBIC9Dsj8Vp4CPF6ny/q3V/Bwp1DAY5dUtIfIjpInd e154vXa2AHxOq51DTea2m55Bm7dKFSDjXFnvISGE4egCWx04iEYbMU4RmBhes1oH fL46iVhSJJ4hHL/FJBkveQqnk7dZ/OVie6RFRF2QoDwgr0gEYe6iln8wq4RWhIOP go3kvvElaJlD0l0flmlRp7vnFmREP1KHjyvM2+0cLLYVC5MPHsK3YMlP//5jcCyD +3PmqtHcXm/Wry0eFT72xVzo7vPfDINalk+/Ol7U5PulbnFITCVbFpNdypv/Hytf H3sRfCkZmXnp9+o7l8HYBRH9RZclVDbp8Tixg16ARI+ng4SCgyrRsHRlnqjAyuIX sxBybgn7h3w= =R+gg -----END PGP SIGNATURE-----
--- End Message ---
