Your message dated Wed, 02 Jan 2019 16:19:42 +0000
with message-id <e1gejf8-000faw...@fasolo.debian.org>
and subject line Bug#916355: fixed in cython 0.29.2-1
has caused the Debian Bug report #916355,
regarding cython: References to non-existent members of PyThreadState in Python
3.7
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
916355: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=916355
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: cython
Version: 0.28.4-1
Severity: grave
Tags: upstream patch
Justification: renders package unusable
Dear Maintainer,
While building and testing an update to lasagne, I got the following
error, which I have tracked down to cython.
```
E Exception: ('The following error happened while compiling the node',
forall_inplace,cpu,scan_fn}(Elemwise{sub,no_inplace}.0,
Subtensor{int64:int64:int64}.0, IncSubtensor{InplaceSet;:int64:}.0,
Join.0), '\n', 'Compilation failed (return status=1):
/<<BUILDDIR>>/lasagne-0.1+git20181019.a61b76f/.pybuild/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid--3.7.2rc1-64/scan_perform/mod.cpp:
In function ‘void __Pyx__ExceptionSave(PyThreadState*, PyObject**,
PyObject**,
PyObject**)’:.
/<<BUILDDIR>>/lasagne-0.1+git20181019.a61b76f/.pybuild/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid--3.7.2rc1-64/scan_perform/mod.cpp:12749:21:
error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named
‘exc_type’; did you mean ‘curexc_type’?. *type = tstate->exc_type;.
^~~~~~~~.
curexc_type.
/<<BUILDDIR>>/lasagne-0.1+git20181019.a61b76f/.pybuild/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid--3.7.2rc1-64/scan_perform/mod.cpp:12750:22:
error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named
‘exc_value’; did you mean ‘curexc_value’?. *value =
tstate->exc_value;. ^~~~~~~~~.
curexc_value.
/<<BUILDDIR>>/lasagne-0.1+git20181019.a61b76f/.pybuild/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid--3.7.2rc1-64/scan_perform/mod.cpp:12751:19:
error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named
‘exc_traceback’; did you mean ‘curexc_traceback’?. *tb =
tstate->exc_traceback;. ^~~~~~~~~~~~~.
curexc_traceback.
/<<BUILDDIR>>/lasagne-0.1+git20181019.a61b76f/.pybuild/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid--3.7.2rc1-64/scan_perform/mod.cpp:
In function ‘void __Pyx__ExceptionReset(PyThreadState*, PyObject*,
PyObject*,
PyObject*)’:.
/<<BUILDDIR>>/lasagne-0.1+git20181019.a61b76f/.pybuild/compiledir_Linux-4.15--generic-x86_64-with-debian-buster-sid--3.7.2rc1-64/scan_perform/mod.cpp:12758:24:
error: ‘PyThreadState’ {aka ‘struct _ts’} has no member named
‘exc_type’; did you mean ‘curexc_type’?. tmp_type =
tstate->exc_type;. ^~~~~~~~.
```
Lasagne uses theano, which run-time compiles Python extensions using
cython. When used with python 3.7, cython generates code containing
references to members of PyThreadState that do not exist. This seems
to be related to an upstream bug which has been fixed:
https://github.com/cython/cython/issues/1955
Therefore, I recommend upgrading the cython package to the latest
release which is only a couple of weeks old. I have provided a merge
request for this update here:
https://salsa.debian.org/python-team/applications/cython/merge_requests/2
regards,
Steve
-- System Information:
Debian Release: buster/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 4.15.0-42-generic (SMP w/4 CPU cores)
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE=C (charmap=UTF-8)
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
Versions of packages cython depends on:
ii libc6 2.28-2
ii python 2.7.15-3
Versions of packages cython recommends:
ii gcc 4:8.2.0-2
ii python-dev 2.7.15-3
Versions of packages cython suggests:
pn cython-doc <none>
-- no debconf information
--- End Message ---
--- Begin Message ---
Source: cython
Source-Version: 0.29.2-1
We believe that the bug you reported is fixed in the latest version of
cython, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 916...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Tobias Hansen <than...@debian.org> (supplier of updated cython package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Wed, 02 Jan 2019 16:56:36 +0100
Source: cython
Binary: cython cython-dbg cython3 cython3-dbg cython-doc
Architecture: source
Version: 0.29.2-1
Distribution: experimental
Urgency: medium
Maintainer: Python Applications Packaging Team
<python-apps-t...@lists.alioth.debian.org>
Changed-By: Tobias Hansen <than...@debian.org>
Description:
cython - C-Extensions for Python
cython-dbg - C-Extensions for Python - debug build
cython-doc - C-Extensions for Python - documentation
cython3 - C-Extensions for Python 3
cython3-dbg - C-Extensions for Python 3 - debug build
Closes: 916355
Changes:
cython (0.29.2-1) experimental; urgency=medium
.
* Team upload to experimental.
* New upstream release. (Closes: #916355)
* Remove patches (applied upstream):
- fix-fused-test.patch
- drop-test.patch
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Files:
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