Your message dated Sun, 15 Dec 2019 02:45:59 +0000
with message-id <[email protected]>
and subject line Bug#907489: fixed in sambamba 0.7.1-1
has caused the Debian Bug report #907489,
regarding sambamba FTBFS
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
907489: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=907489
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: sambamba
Version: 0.6.7-2
Severity: serious
Tags: ftbfs
https://tests.reproducible-builds.org/debian/rb-pkg/unstable/amd64/sambamba.html
...
[5/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d -enable-color -O -g
-release -wi -of 'sambamba@exe/sambamba_sort.d.o' -c ../sambamba/sort.d
FAILED: sambamba@exe/sambamba_sort.d.o
ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d -enable-color -O -g -release -wi
-of 'sambamba@exe/sambamba_sort.d.o' -c ../sambamba/sort.d
/usr/lib/ldc/x86_64-linux-gnu/include/d/std/numeric.d(1845): Error:
read-modify-write operations are not allowed for `shared` variables. Use
`core.atomic.atomicOp!"+="(s, e)` instead.
/usr/lib/ldc/x86_64-linux-gnu/include/d/std/numeric.d(1871): Error:
read-modify-write operations are not allowed for `shared` variables. Use
`core.atomic.atomicOp!"*="(e, f)` instead.
../sambamba/sort.d(427): Error: template instance
`std.numeric.normalize!(shared(float)[])` error instantiating
../sambamba/sort.d(265): instantiated from here:
`mergeSortedChunks!(compareReadNames)`
../sambamba/sort.d(445): Error: forward reference to inferred return type of
function call `function (ulong j)
{
return (lazy float progress)
{
atomicStore(merging_progress[j], progress);
synchronized(bar) {
bar.update(dotProduct(merging_progress, weights));
}
}
;
}
(i)`
../sambamba/sort.d(267): Error: template instance
`sambamba.sort.Sorter.mergeSortedChunks!(mixedCompareReadNames)` error
instantiating
../sambamba/sort.d(269): Error: template instance
`sambamba.sort.Sorter.mergeSortedChunks!(compareCoordinatesAndStrand)` error
instantiating
[6/74] ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d -enable-color -O -g
-release -wi -of 'sambamba@exe/sambamba_merge.d.o' -c ../sambamba/merge.d
FAILED: sambamba@exe/sambamba_merge.d.o
ldc2 -Isambamba@exe -I. -I.. -I/usr/include/d -enable-color -O -g -release -wi
-of 'sambamba@exe/sambamba_merge.d.o' -c ../sambamba/merge.d
/usr/lib/ldc/x86_64-linux-gnu/include/d/std/numeric.d(1845): Error:
read-modify-write operations are not allowed for `shared` variables. Use
`core.atomic.atomicOp!"+="(s, e)` instead.
/usr/lib/ldc/x86_64-linux-gnu/include/d/std/numeric.d(1871): Error:
read-modify-write operations are not allowed for `shared` variables. Use
`core.atomic.atomicOp!"*="(e, f)` instead.
../sambamba/merge.d(407): Error: template instance
`std.numeric.normalize!(shared(float)[])` error instantiating
--- End Message ---
--- Begin Message ---
Source: sambamba
Source-Version: 0.7.1-1
We believe that the bug you reported is fixed in the latest version of
sambamba, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Matthias Klumpp <[email protected]> (supplier of updated sambamba package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sun, 15 Dec 2019 12:52:42 +0100
Source: sambamba
Architecture: source
Version: 0.7.1-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<[email protected]>
Changed-By: Matthias Klumpp <[email protected]>
Closes: 907489
Changes:
sambamba (0.7.1-1) unstable; urgency=medium
.
[ Andreas Tille ]
* New upstream release
Closes: #907489
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Add build time test
* Allow pre-releases in watch file
* Versioned Build-Depends: libbiod (>= 0.2.1)
.
[ Steffen Möller ]
* Update metadata with ref to conda
.
[ Matthias Klumpp ]
* New upstream version: 0.7.1
* Run tests and build with strong optimizations
* add-meson-build.patch: Update Meson build definition
- Closes: #907489
- We link against BioD stantically now
- Tests are integrated into Meson
- Allow switching on stronger optimizations used by the
upstream Makefile
* Depend on latest libbiod (>= 0.2.3)
* Don't depend on libundead
* Bump dh compat level to 12
* Bump standards version (No changes needed)
* Remove test artifacts in clean target
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--- End Message ---
