Your message dated Mon, 20 Apr 2020 17:36:07 +0000
with message-id <e1jqal1-0008em...@fasolo.debian.org>
and subject line Bug#955656: fixed in python-cobra 0.18.0-1
has caused the Debian Bug report #955656,
regarding python-cobra: FTBFS: E ModuleNotFoundError: No module named
'matplotlib'
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
955656: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=955656
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: python-cobra
Version: 0.14.2-2
Severity: serious
Justification: FTBFS on amd64
Tags: bullseye sid ftbfs
Usertags: ftbfs-20200402 ftbfs-bullseye
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> debian/rules build
> dh build --with python3 --buildsystem=pybuild
> dh_update_autotools_config -O--buildsystem=pybuild
> dh_autoreconf -O--buildsystem=pybuild
> dh_auto_configure -O--buildsystem=pybuild
> I: pybuild base:217: python3.7 setup.py config
> running config
> I: pybuild base:217: python3.8 setup.py config
> running config
> dh_auto_build -O--buildsystem=pybuild
> I: pybuild base:217: /usr/bin/python3.7 setup.py build
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
> copying cobra/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
> copying cobra/exceptions.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
> copying cobra/util/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
> copying cobra/util/array.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
> copying cobra/util/util.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
> copying cobra/util/solver.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
> copying cobra/util/context.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/util
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/configuration.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/object.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/species.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/singleton.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/gene.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/dictlist.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/metabolite.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/reaction.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/model.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/formula.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> copying cobra/core/solution.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/core
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/geometric.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/room.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/loopless.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/deletion.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/gapfilling.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/phenotype_phase_plane.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/variability.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/sampling.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/parsimonious.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/summary.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/moma.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/reaction.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/flux_analysis
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
> copying cobra/test/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
> copying cobra/test/test_manipulation.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
> copying cobra/test/test_medium.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
> copying cobra/test/conftest.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
> copying cobra/manipulation/validate.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
> copying cobra/manipulation/modify.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
> copying cobra/manipulation/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
> copying cobra/manipulation/delete.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
> copying cobra/manipulation/annotate.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/manipulation
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
> copying cobra/medium/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
> copying cobra/medium/annotations.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
> copying cobra/medium/boundary_types.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
> copying cobra/medium/minimal_medium.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/medium
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> copying cobra/io/dict.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> copying cobra/io/sbml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> copying cobra/io/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> copying cobra/io/json.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> copying cobra/io/yaml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> copying cobra/io/mat.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> copying cobra/io/sbml3.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_sbml3.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_mat.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_sbml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_pickle.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/conftest.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_yaml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_json.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_io_order.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/test_io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/iJO1366.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/invalid0.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc1.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini_cobra.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/update_pickles.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/raven.mat ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/textbook.xml.gz ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc2.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/textbook_fva.json ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.genes ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/textbook_pfba_fva.json ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/raven.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/invalid2.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/iJO1366.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/invalid1.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.media ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/textbook_solution.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini.mat ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini.yml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini.json ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc2.xml.bz2 ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc2.xml.gz ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/data
> I: pybuild base:217: /usr/bin/python3 setup.py build
> running build
> running build_py
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
> copying cobra/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
> copying cobra/exceptions.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
> copying cobra/util/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
> copying cobra/util/array.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
> copying cobra/util/util.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
> copying cobra/util/solver.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
> copying cobra/util/context.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/util
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/configuration.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/object.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/species.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/singleton.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/gene.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/dictlist.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/metabolite.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/reaction.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/model.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/formula.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> copying cobra/core/solution.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/core
> creating
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/geometric.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/room.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/loopless.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/deletion.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/gapfilling.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/phenotype_phase_plane.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/variability.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/sampling.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/parsimonious.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/summary.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/moma.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> copying cobra/flux_analysis/reaction.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/flux_analysis
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
> copying cobra/test/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
> copying cobra/test/test_manipulation.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
> copying cobra/test/test_medium.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
> copying cobra/test/conftest.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
> copying cobra/manipulation/validate.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
> copying cobra/manipulation/modify.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
> copying cobra/manipulation/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
> copying cobra/manipulation/delete.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
> copying cobra/manipulation/annotate.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/manipulation
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
> copying cobra/medium/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
> copying cobra/medium/annotations.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
> copying cobra/medium/boundary_types.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
> copying cobra/medium/minimal_medium.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/medium
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> copying cobra/io/dict.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> copying cobra/io/sbml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> copying cobra/io/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> copying cobra/io/json.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> copying cobra/io/yaml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> copying cobra/io/mat.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> copying cobra/io/sbml3.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_sbml3.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_mat.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_sbml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/__init__.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_pickle.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/conftest.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_yaml.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_json.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> copying cobra/test/test_io/test_io_order.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/test_io
> creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/iJO1366.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/invalid0.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc1.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini_cobra.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/update_pickles.py ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/raven.mat ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/textbook.xml.gz ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc2.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/textbook_fva.json ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.genes ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/textbook_pfba_fva.json ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/raven.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/invalid2.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/iJO1366.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/invalid1.xml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/salmonella.media ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/textbook_solution.pickle ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini.mat ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini.yml ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini.json ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc2.xml.bz2 ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> copying cobra/test/data/mini_fbc2.xml.gz ->
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.8_cobra/build/cobra/test/data
> dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build;
> python3.7 -m pytest
> ============================= test session starts
> ==============================
> platform linux -- Python 3.7.7, pytest-4.6.9, py-1.8.1, pluggy-0.13.0
> benchmark: 3.2.2 (defaults: timer=time.perf_counter disable_gc=False
> min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10
> warmup=False warmup_iterations=100000)
> rootdir: /<<PKGBUILDDIR>>, inifile: setup.cfg
> plugins: benchmark-3.2.2
> collected 0 items / 1 errors
>
> ==================================== ERRORS
> ====================================
> ________________________ ERROR collecting test session
> _________________________
> /usr/lib/python3/dist-packages/_pytest/config/__init__.py:440: in
> _importconftest
> return self._conftestpath2mod[conftestpath]
> E KeyError:
> local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py')
>
> During handling of the above exception, another exception occurred:
> /usr/lib/python3/dist-packages/_pytest/config/__init__.py:446: in
> _importconftest
> mod = conftestpath.pyimport()
> /usr/lib/python3/dist-packages/py/_path/local.py:701: in pyimport
> __import__(modname)
> cobra/__init__.py:11: in <module>
> from cobra.core import (
> cobra/core/__init__.py:5: in <module>
> from cobra.core.configuration import Configuration
> cobra/core/configuration.py:16: in <module>
> from cobra.util.solver import interface_to_str, solvers
> cobra/util/__init__.py:5: in <module>
> from cobra.util.array import *
> cobra/util/array.py:8: in <module>
> import pandas as pd
> /usr/lib/python3/dist-packages/pandas/__init__.py:182: in <module>
> import pandas.testing
> /usr/lib/python3/dist-packages/pandas/testing.py:7: in <module>
> from pandas.util.testing import (
> /usr/lib/python3/dist-packages/pandas/util/testing.py:18: in <module>
> from matplotlib.cbook import MatplotlibDeprecationWarning
> E ModuleNotFoundError: No module named 'matplotlib'
>
> During handling of the above exception, another exception occurred:
> /usr/lib/python3/dist-packages/py/_path/common.py:383: in visit
> for x in Visitor(fil, rec, ignore, bf, sort).gen(self):
> /usr/lib/python3/dist-packages/py/_path/common.py:435: in gen
> for p in self.gen(subdir):
> /usr/lib/python3/dist-packages/py/_path/common.py:424: in gen
> dirs = self.optsort([p for p in entries
> /usr/lib/python3/dist-packages/py/_path/common.py:425: in <listcomp>
> if p.check(dir=1) and (rec is None or rec(p))])
> /usr/lib/python3/dist-packages/_pytest/main.py:667: in _recurse
> ihook = self.gethookproxy(dirpath)
> /usr/lib/python3/dist-packages/_pytest/main.py:482: in gethookproxy
> my_conftestmodules = pm._getconftestmodules(fspath)
> /usr/lib/python3/dist-packages/_pytest/config/__init__.py:424: in
> _getconftestmodules
> mod = self._importconftest(conftestpath.realpath())
> /usr/lib/python3/dist-packages/_pytest/config/__init__.py:463: in
> _importconftest
> raise ConftestImportFailure(conftestpath, sys.exc_info())
> E _pytest.config.ConftestImportFailure:
> (local('/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build/cobra/test/conftest.py'),
> (<class 'ModuleNotFoundError'>, ModuleNotFoundError("No module named
> 'matplotlib'"), <traceback object at 0x7f5afd189140>))
> !!!!!!!!!!!!!!!!!!! Interrupted: 1 errors during collection
> !!!!!!!!!!!!!!!!!!!!
> =========================== 1 error in 0.70 seconds
> ============================
> E: pybuild pybuild:352: test: plugin distutils failed with: exit code=2: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7_cobra/build; python3.7 -m pytest
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.7
> 3.8" returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2020/04/02/python-cobra_0.14.2-2_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.
--- End Message ---
--- Begin Message ---
Source: python-cobra
Source-Version: 0.18.0-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
python-cobra, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 955...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated python-cobra package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Mon, 20 Apr 2020 19:11:22 +0200
Source: python-cobra
Architecture: source
Version: 0.18.0-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 955656
Changes:
python-cobra (0.18.0-1) unstable; urgency=medium
.
* Team upload.
* Drop outdated TODO
* debhelper-compat 12
* Standards-Version: 4.5.0 (routine-update)
* python3-sbml is now python2-sbml5
* d/control:
- Build-Depends: python3-matplotlib
Closes: #955656
- Use nocheck
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* debian/copyright: use spaces rather than tabs to start continuation
lines.
* Use secure URI in Homepage field.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* debian/tests/control: s/ADTTMP/AUTOPKGTEST_TMP/
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Files:
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