Your message dated Sat, 08 Aug 2020 14:35:46 +0000 with message-id <e1k4pwo-0004so...@fasolo.debian.org> and subject line Bug#961224: fixed in python-cobra 0.18.1-2 has caused the Debian Bug report #961224, regarding python-cobra: test failures on s390x to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 961224: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=961224 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: python-cobra Version: 0.18.0-1 Severity: serious Three of the last four builds of python-cobra on s390x have failed with.=================================== FAILURES =================================== ___________ test_model_summary_to_frame_with_fva[optlang-glpk-0.95] ____________ model = <Model e_coli_core at 0x3ff6e63b3d0>, opt_solver = 'optlang-glpk' fraction = 0.95 @pytest.mark.parametrize("fraction", [0.95]) def test_model_summary_to_frame_with_fva(model, opt_solver, fraction): """Test model summary.to_frame() (using FVA).""" if opt_solver == "optlang-gurobi": pytest.xfail("FVA currently buggy") # test non-fva version (these should be fixed for textbook model) expected_in_fluxes = ['o2_e', 'glc__D_e', 'nh4_e', 'pi_e', np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan, np.nan] expected_out_fluxes = ['h2o_e', 'co2_e', 'h_e', 'for_e', 'ac_e', 'acald_e', 'pyr_e', 'etoh_e', 'lac__D_e', 'succ_e', 'akg_e', 'glu__L_e']model.solver = opt_solversolution = model.optimize() out_df = model.summary(solution, fva=fraction).to_frame()assert out_df[('IN_FLUXES', 'ID')].tolist() == expected_in_fluxes> assert out_df[('OUT_FLUXES', 'ID')].tolist() == expected_out_fluxes E AssertionError: assert ['h2o_e', 'co... 'pyr_e', ...] == ['h2o_e', 'co2...acald_e', ...] E At index 5 diff: 'pyr_e' != 'acald_e' E Use -v to get the full diff
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--- Begin Message ---Source: python-cobra Source-Version: 0.18.1-2 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of python-cobra, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 961...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated python-cobra package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 08 Aug 2020 14:59:14 +0200 Source: python-cobra Architecture: source Version: 0.18.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag...@lists.alioth.debian.org> Changed-By: Andreas Tille <ti...@debian.org> Closes: 961224 Changes: python-cobra (0.18.1-2) unstable; urgency=medium . * Exclude s390x from list of architectures since one test of the test suite fails on this architecture and there are no resources to track this down. Closes: #961224 Checksums-Sha1: b89855092aa8ab7bacd4db20b9bcc2b86c2dfc0b 2927 python-cobra_0.18.1-2.dsc bf138cbfa7e681affdee4d6f6a1f0b9babe88e9e 7856 python-cobra_0.18.1-2.debian.tar.xz 5ca0d5e762a7a0dce21dfccfa971b9c3a3b5bdd2 9646 python-cobra_0.18.1-2_amd64.buildinfo Checksums-Sha256: 80e8633e7e8fdac783a38db94724b34d138525cf0ba1223f996482d526dc81b5 2927 python-cobra_0.18.1-2.dsc 524f1e3f4a7de9d652fd24b4cd0579e5cd0e816e9130c136c998b717c42ee517 7856 python-cobra_0.18.1-2.debian.tar.xz f3f7749259a2f49afaaf720992c9ddd52dafb11794802102664ca3cc0b513a03 9646 python-cobra_0.18.1-2_amd64.buildinfo Files: 62e436d5ca806619b249e8f29eadd6d1 2927 python optional python-cobra_0.18.1-2.dsc 5c8be7d6e4af7cba7f40545c30f1c1e9 7856 python optional python-cobra_0.18.1-2.debian.tar.xz 00a4606f3babffce51403dee4f86f558 9646 python optional python-cobra_0.18.1-2_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8urkoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFRRRAAg0JuZ2PFVDkfatYr3wBuN+s2J8ByDhm8 9mQQ/6cXQH9VtArHr3WJmonjHFPjh4IKPjs+Ohjb2R7LRwjAFdlCnlog98Tn6fzE ixNFR6GTzdVIa5UZFXld9BbntswPDJZLLyIYx7m1YIES9OMXqJc4ld7fXjtSnpGl yTiynhPTSveeBkqfCCEwgJHoFvNY92dUh3MBA71LevlN7nl2mEYMjXtUY9+52bMS hEci7cGEBZceoWMVhNypP2Bb/s6zgVhyP0DzYqYTQkDLNFhE98Ku+t8Z5PX+kl2p MZ8Cnnc1N9IU/Ay/uHQDJqfEzuuYPyLg49MFmRWNfWEXrKZyl+4UMmwBSEdfuHxH yUoL7kGH3nFBW+xv4Y52tJJA0bSZ6WAs1/j6v49bbTQGh8FkxzEpMhWfJQTXVrDg w5RSQQjnA5PEtmpREaHaLrLrj2FQUaSMFfv+J/7kzaiqQMrNoAe297Ch6361kdNu QquOGICJ/5w5Pij2I4ArthnPbyTdyy46dy99doXqWTmGTQdTMxrQYSXm61QDUCde 7D4Nv5m+FbTdFUwwxrIisyD3LsxVKZcjBwmM7NYfhsd0ZEI78q8Hai2bAZkMhPZu C4cjQaLarlVdpleZZ5j4z5zyVjsiyv1yk1zcPo3bojUTdUneiOm51pf5PTZYMRLr CcgPk3oorkQ= =KgCE -----END PGP SIGNATURE-----
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