Your message dated Sat, 19 Dec 2020 19:05:24 +0000
with message-id <e1kqhxg-0008ur...@fasolo.debian.org>
and subject line Bug#957847: fixed in sundials 4.1.0+dfsg-2
has caused the Debian Bug report #957847,
regarding sundials: ftbfs with GCC-10
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
957847: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=957847
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Package: src:sundials
Version: 3.1.2+dfsg-3
Severity: normal
Tags: sid bullseye
User: debian-...@lists.debian.org
Usertags: ftbfs-gcc-10
Please keep this issue open in the bug tracker for the package it
was filed for. If a fix in another package is required, please
file a bug for the other package (or clone), and add a block in this
package. Please keep the issue open until the package can be built in
a follow-up test rebuild.
The package fails to build in a test rebuild on at least amd64 with
gcc-10/g++-10, but succeeds to build with gcc-9/g++-9. The
severity of this report will be raised before the bullseye release,
so nothing has to be done for the buster release.
The full build log can be found at:
http://people.debian.org/~doko/logs/gcc10-20200225/sundials_3.1.2+dfsg-3_unstable_gcc10.log
The last lines of the build log are at the end of this report.
To build with GCC 10, either set CC=gcc-10 CXX=g++-10 explicitly,
or install the gcc, g++, gfortran, ... packages from experimental.
apt-get -t=experimental install g++
Common build failures are new warnings resulting in build failures with
-Werror turned on, or new/dropped symbols in Debian symbols files.
For other C/C++ related build failures see the porting guide at
http://gcc.gnu.org/gcc-10/porting_to.html
[...]
make -f
examples/arkode/F77_parallel/CMakeFiles/fark_diag_kry_bbd_p.dir/build.make
examples/arkode/F77_parallel/CMakeFiles/fark_diag_kry_bbd_p.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/debian/build'
[ 94%] Linking C executable test_nvector_petsc
cd /<<PKGBUILDDIR>>/debian/build/examples/nvector/petsc && /usr/bin/cmake -E
cmake_link_script CMakeFiles/test_nvector_petsc.dir/link.txt --verbose=1
Scanning dependencies of target fark_diag_non_p
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make -f examples/arkode/F77_parallel/CMakeFiles/fark_diag_non_p.dir/build.make
examples/arkode/F77_parallel/CMakeFiles/fark_diag_non_p.dir/build
[ 94%] Building Fortran object
examples/arkode/F77_parallel/CMakeFiles/fark_diag_kry_bbd_p.dir/fark_diag_kry_bbd_p.f.o
make[3]: Entering directory '/<<PKGBUILDDIR>>/debian/build'
cd /<<PKGBUILDDIR>>/debian/build/examples/arkode/F77_parallel &&
/usr/bin/mpif77 -I/usr/include/suitesparse -I/usr/include/hypre
-I/usr/lib/petscdir/petsc3.12/x86_64-linux-gnu-real/include
-I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/debian/build/include -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c
/<<PKGBUILDDIR>>/examples/arkode/F77_parallel/fark_diag_kry_bbd_p.f -o
CMakeFiles/fark_diag_kry_bbd_p.dir/fark_diag_kry_bbd_p.f.o
/usr/bin/mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=.
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic
CMakeFiles/test_nvector_petsc.dir/test_nvector_petsc.c.o
CMakeFiles/test_nvector_petsc.dir/__/test_nvector.c.o
CMakeFiles/test_nvector_petsc.dir/__/__/__/src/sundials/sundials_nvector.c.o
-o test_nvector_petsc -Wl,-rpath,/<<PKGBUILDDIR>>/debian/build/src/nvec_petsc
../../../src/nvec_petsc/libsundials_nvecpetsc.so.3.1.2 -lm -lrt -lpetsc -lm
-lpetsc
[ 94%] Building Fortran object
examples/arkode/F77_parallel/CMakeFiles/fark_diag_non_p.dir/fark_diag_non_p.f.o
cd /<<PKGBUILDDIR>>/debian/build/examples/arkode/F77_parallel &&
/usr/bin/mpif77 -I/usr/include/suitesparse -I/usr/include/hypre
-I/usr/lib/petscdir/petsc3.12/x86_64-linux-gnu-real/include
-I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/debian/build/include -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -c
/<<PKGBUILDDIR>>/examples/arkode/F77_parallel/fark_diag_non_p.f -o
CMakeFiles/fark_diag_non_p.dir/fark_diag_non_p.f.o
[ 94%] Linking Fortran executable fark_diurnal_kry_bp
cd /<<PKGBUILDDIR>>/debian/build/examples/arkode/F77_serial && /usr/bin/cmake
-E cmake_link_script CMakeFiles/fark_diurnal_kry_bp.dir/link.txt --verbose=1
/usr/bin/gfortran -Wl,-z,relro -Wl,-z,now -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
CMakeFiles/fark_diurnal_kry_bp.dir/fark_diurnal_kry_bp.f.o -o
fark_diurnal_kry_bp -L/usr/lib/gcc/x86_64-linux-gnu/10
-Wl,-rpath,/<<PKGBUILDDIR>>/debian/build/src/arkode:/<<PKGBUILDDIR>>/debian/build/src/nvec_ser
../../../src/arkode/fcmix/libsundials_farkode.a
../../../src/arkode/libsundials_arkode.so.2.1.2
../../../src/nvec_ser/libsundials_fnvecserial.so.3.1.2
../../../src/nvec_ser/libsundials_nvecserial.so.3.1.2 -lm
/usr/lib/x86_64-linux-gnu/librt.so -lm -lgcc -lgcc_s -lc -lgcc -lgcc_s
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x18):
multiple definition of `F2C_IDA_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x18):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x10):
multiple definition of `F2C_KINSOL_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x10):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x20):
multiple definition of `F2C_CVODE_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x20):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_sol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x0):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknulllinsol.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknulllinsol.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_sol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x0):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknullmatrix.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_matrix';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunmatrix_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknullmatrix.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_matrix';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunmatrix_band.c.o):(.bss+0x0):
first defined here
/<<PKGBUILDDIR>>/examples/arkode/F77_parallel/fark_diag_non_p.f:81:72:
81 | 10 Y(I) = 1.0D0
| 1
Warning: Fortran 2018 deleted feature: DO termination statement which is not
END DO or CONTINUE with label 10 at (1)
collect2: error: ld returned 1 exit status
make[3]: ***
[examples/arkode/F77_serial/CMakeFiles/fark_diurnal_kry_bp.dir/build.make:92:
examples/arkode/F77_serial/fark_diurnal_kry_bp] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[2]: *** [CMakeFiles/Makefile2:5197:
examples/arkode/F77_serial/CMakeFiles/fark_diurnal_kry_bp.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
[ 94%] Built target test_nvector_petsc
[ 95%] Linking Fortran executable fark_diag_non_p
cd /<<PKGBUILDDIR>>/debian/build/examples/arkode/F77_parallel && /usr/bin/cmake
-E cmake_link_script CMakeFiles/fark_diag_non_p.dir/link.txt --verbose=1
/usr/bin/mpif77 -Wl,-z,relro -Wl,-z,now -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
CMakeFiles/fark_diag_non_p.dir/fark_diag_non_p.f.o -o fark_diag_non_p
-L/usr/lib/gcc/x86_64-linux-gnu/10
-Wl,-rpath,/<<PKGBUILDDIR>>/debian/build/src/arkode:/<<PKGBUILDDIR>>/debian/build/src/nvec_par
../../../src/arkode/fcmix/libsundials_farkode.a
../../../src/arkode/libsundials_arkode.so.2.1.2
../../../src/nvec_par/libsundials_fnvecparallel.so.3.1.2
../../../src/nvec_par/libsundials_nvecparallel.so.3.1.2 -lm
/usr/lib/x86_64-linux-gnu/librt.so -lm -lgcc -lgcc_s -lc -lgcc -lgcc_s
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknulllinsol.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknulllinsol.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_sol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x0):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknullmatrix.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_matrix';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunmatrix_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknullmatrix.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_matrix';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunmatrix_band.c.o):(.bss+0x0):
first defined here
[ 95%] Linking Fortran executable fark_diag_kry_bbd_p
cd /<<PKGBUILDDIR>>/debian/build/examples/arkode/F77_parallel && /usr/bin/cmake
-E cmake_link_script CMakeFiles/fark_diag_kry_bbd_p.dir/link.txt --verbose=1
/usr/bin/mpif77 -Wl,-z,relro -Wl,-z,now -g -O2
-fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong
CMakeFiles/fark_diag_kry_bbd_p.dir/fark_diag_kry_bbd_p.f.o -o
fark_diag_kry_bbd_p -L/usr/lib/gcc/x86_64-linux-gnu/10
-Wl,-rpath,/<<PKGBUILDDIR>>/debian/build/src/arkode:/<<PKGBUILDDIR>>/debian/build/src/nvec_par
../../../src/arkode/fcmix/libsundials_farkode.a
../../../src/arkode/libsundials_arkode.so.2.1.2
../../../src/nvec_par/libsundials_fnvecparallel.so.3.1.2
../../../src/nvec_par/libsundials_nvecparallel.so.3.1.2 -lm
/usr/lib/x86_64-linux-gnu/librt.so -lm -lgcc -lgcc_s -lc -lgcc -lgcc_s
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x18):
multiple definition of `F2C_IDA_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x18):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x10):
multiple definition of `F2C_KINSOL_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x10):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x20):
multiple definition of `F2C_CVODE_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x20):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_spgmr.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_sol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x0):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknulllinsol.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_linsol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknulllinsol.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_sol';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunlinsol_band.c.o):(.bss+0x0):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknullmatrix.c.o):(.bss+0x8):
multiple definition of `F2C_ARKODE_matrix';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunmatrix_band.c.o):(.bss+0x8):
first defined here
/usr/bin/ld:
../../../src/arkode/fcmix/libsundials_farkode.a(farknullmatrix.c.o):(.bss+0x0):
multiple definition of `F2C_ARKODE_mass_matrix';
../../../src/arkode/fcmix/libsundials_farkode.a(fsunmatrix_band.c.o):(.bss+0x0):
first defined here
collect2: error: ld returned 1 exit status
make[3]: ***
[examples/arkode/F77_parallel/CMakeFiles/fark_diag_non_p.dir/build.make:92:
examples/arkode/F77_parallel/fark_diag_non_p] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[2]: *** [CMakeFiles/Makefile2:5257:
examples/arkode/F77_parallel/CMakeFiles/fark_diag_non_p.dir/all] Error 2
collect2: error: ld returned 1 exit status
make[3]: ***
[examples/arkode/F77_parallel/CMakeFiles/fark_diag_kry_bbd_p.dir/build.make:92:
examples/arkode/F77_parallel/fark_diag_kry_bbd_p] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[2]: *** [CMakeFiles/Makefile2:5227:
examples/arkode/F77_parallel/CMakeFiles/fark_diag_kry_bbd_p.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
make[1]: *** [Makefile:144: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/debian/build'
dh_auto_build: error: cd debian/build && make -j4 "INSTALL=install
--strip-program=true" returned exit code 2
make: *** [debian/rules:45: binary] Error 25
dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2
--- End Message ---
--- Begin Message ---
Source: sundials
Source-Version: 4.1.0+dfsg-2
Done: Anton Gladky <gl...@debian.org>
We believe that the bug you reported is fixed in the latest version of
sundials, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 957...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Anton Gladky <gl...@debian.org> (supplier of updated sundials package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 19 Dec 2020 19:39:39 +0100
Source: sundials
Architecture: source
Version: 4.1.0+dfsg-2
Distribution: experimental
Urgency: medium
Maintainer: Debian Science Team
<debian-science-maintain...@lists.alioth.debian.org>
Changed-By: Anton Gladky <gl...@debian.org>
Closes: 957847
Changes:
sundials (4.1.0+dfsg-2) experimental; urgency=medium
.
[ Dima Kogan ]
* Team upload.
* [dc8951d] Fixed build in gcc-10. Closes: #957847
.
[ Anton Gladky ]
* [97da769] Add .gitlab-ci.yml
* Upload into unstable
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