Source: python-cobra Version: 0.19.0-1 Severity: serious Tags: sid bullseye X-Debbugs-CC: debian...@lists.debian.org User: debian...@lists.debian.org Usertags: regression
Hi Maintainer The autopkgtests of python-cobra recently started to fail in testing [1]. I've copied what I hope is the relevant part of the log below. Regards Graham [1] https://ci.debian.net/packages/p/python-cobra/testing/amd64/ ==================================== ERRORS ==================================== ______________ ERROR at setup of TestManipulation.test_escape_ids ______________ filename = '/usr/lib/python3/dist-packages/cobra/test/data/textbook.xml.gz' number = <class 'float'> f_replace = {'F_GENE': <function _f_gene at 0x7f75f8c3cc10>, 'F_GENE_REV': <function _f_gene_rev at 0x7f75f8c3cca0>, 'F_GROUP': <function _f_group at 0x7f75f8c3cf70>, 'F_GROUP_REV': <function _f_group_rev at 0x7f75f8531040>, ...} kwargs = {} doc = <libsbml.SBMLDocument; proxy of <Swig Object of type 'SBMLDocument *' at 0x7f75f402cc60> > cobra_error = CobraSBMLError('Something went wrong reading the SBML model. Most likely the SBML model is not valid. Please check tha...ame)`\nIf the model is valid and cannot be read please open an issue at https://github.com/opencobra/cobrapy/issues .')