Source: metastudent-data, metastudent Control: found -1 metastudent-data/2.0.1-5 Control: found -1 metastudent/2.0.1-8 Severity: serious Tags: sid bullseye X-Debbugs-CC: [email protected] User: [email protected] Usertags: breaks needs-update
Dear maintainer(s),
With a recent upload (60 days ago) of metastudent-data the autopkgtest
of metastudent fails in testing when that autopkgtest is run with the
binary packages of metastudent-data from unstable. It passes when run
with only packages from testing. In tabular form:
pass fail
metastudent-data from testing 2.0.1-5
metastudent from testing 2.0.1-8
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is blocking the migration of metastudent-data
to testing [1]. Due to the nature of this issue, I filed this bug report
against both packages. Can you please investigate the situation and
reassign the bug to the right package?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=metastudent-data
https://ci.debian.net/data/autopkgtest/testing/amd64/m/metastudent/10073288/log.gz
autopkgtest [10:33:51]: test run-unit-test: [-----------------------
The Rost Lab recommends you install the pp-popularity-contest package
that provides pp_popcon_cnt:
sudo apt-get install pp-popularity-contest
Error occurred: Exception
Creating tmpDir...
Using
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q
Copying input file to tmpDir...
Loading Gene Ontology...
Running Blast MFO
!!!Error!!! /usr/bin/blastpgp -i
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta
-o
/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast
-d /usr/share/metastudent-data/dataset_201401/MFO/goasp.fasta -e 1.0 -j
3 -b 1000 -v 1000
1>/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast.out
2>/tmp/autopkgtest-lxc.27xrgf95/downtmp/autopkgtest_tmp/metastudentr2yep04q/fasta_splits/split_0.fasta.blast.err
255
Deleting temp directories...
====== Metastudent finished ======
Traceback (most recent call last):
File "/usr/bin/metastudent", line 775, in <module>
runIt(tempfile, inputFastaFilePath, outputFilePath, outputBlast,
blastKickstartDatabasePaths,
File "/usr/bin/metastudent", line 202, in runIt
runBlast(fastaFilePathLocal, database, blastOutputFilePathLocal,
tmpDirPath, configMap["BLAST_EVAL_%s" % (
File "/usr/lib/python3/dist-packages/metastudentPkg/runMethods.py",
line 46, in runBlast
raise Exception
Exception
autopkgtest [10:33:53]: test run-unit-test: -----------------------]
OpenPGP_signature
Description: OpenPGP digital signature
