Your message dated Sat, 06 Feb 2021 07:19:01 +0000 with message-id <e1l8hrx-0006ih...@fasolo.debian.org> and subject line Bug#981820: fixed in r-bioc-purecn 1.20.0+dfsg-3 has caused the Debian Bug report #981820, regarding r-bioc-purecn: autopkgtest failure to be marked as done.
This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact ow...@bugs.debian.org immediately.) -- 981820: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=981820 Debian Bug Tracking System Contact ow...@bugs.debian.org with problems
--- Begin Message ---Source: r-bioc-purecn Version: 1.20.0+dfsg-2 Severity: serious Control: affects -1 src:bcbio https://ci.debian.net/data/autopkgtest/testing/amd64/r/r-bioc-purecn/10259298/log.gz ... ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error (test_annotateTargets.R:2:1): (code run outside of `test_that()`) ───── Error: there is no package called ‘TxDb.Hsapiens.UCSC.hg19.knownGene’ Backtrace: █ 1. └─base::library(TxDb.Hsapiens.UCSC.hg19.knownGene) test_annotateTargets.R:2:0 ── Error (test_processMultipleSamples.R:18:2): example output correct ────────── Error: processMultipleSamples requires the copynumber package. This is most likely a user error due to invalid input data or parameters (PureCN 1.20.0). Backtrace: █ 1. └─PureCN::processMultipleSamples(...) test_processMultipleSamples.R:18:8 2. └─PureCN:::.stopUserError("processMultipleSamples requires the copynumber package.") [ FAIL 2 | WARN 13 | SKIP 1 | PASS 336 ] Error: Test failures Execution halted autopkgtest [08:02:24]: test pkg-r-autopkgtest: -----------------------] autopkgtest [08:02:24]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - pkg-r-autopkgtest FAIL non-zero exit status 1 autopkgtest [08:02:24]: @@@@@@@@@@@@@@@@@@@@ summary run-unit-test PASS pkg-r-autopkgtest FAIL non-zero exit status 1
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--- Begin Message ---Source: r-bioc-purecn Source-Version: 1.20.0+dfsg-3 Done: Andreas Tille <ti...@debian.org> We believe that the bug you reported is fixed in the latest version of r-bioc-purecn, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 981...@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <ti...@debian.org> (supplier of updated r-bioc-purecn package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmas...@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 1.8 Date: Sat, 06 Feb 2021 07:59:48 +0100 Source: r-bioc-purecn Architecture: source Version: 1.20.0+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers <r-pkg-t...@alioth-lists.debian.net> Changed-By: Andreas Tille <ti...@debian.org> Closes: 981820 Changes: r-bioc-purecn (1.20.0+dfsg-3) unstable; urgency=medium . * Deactivate Testsuite: autopkgtest-pkg-r Closes: #981820 Checksums-Sha1: 493346b5765bebe70bde646c38fd47e085e7713f 2539 r-bioc-purecn_1.20.0+dfsg-3.dsc a1eb1a90d52406d4ed277a73dc82f5206022e38a 6224 r-bioc-purecn_1.20.0+dfsg-3.debian.tar.xz 659364fe6f6ee63e4cb656482d9d084230310879 14156 r-bioc-purecn_1.20.0+dfsg-3_amd64.buildinfo Checksums-Sha256: 8c77a0de56490489ae93d3559131aa1767c8bbee870df5d3a0079339058f2742 2539 r-bioc-purecn_1.20.0+dfsg-3.dsc a38474d940fb89bcb60768e1300473eb0c370c114aa532948ad56b5f3922bb65 6224 r-bioc-purecn_1.20.0+dfsg-3.debian.tar.xz 0ecfe41530da41c35974d920d5a75769db65b2f97e3608976bf8ebb1c9aca33e 14156 r-bioc-purecn_1.20.0+dfsg-3_amd64.buildinfo Files: 33406b54480463d11aebeaa711a9d07d 2539 gnu-r optional r-bioc-purecn_1.20.0+dfsg-3.dsc 46799739ef6bf19232c030624e524bd7 6224 gnu-r optional r-bioc-purecn_1.20.0+dfsg-3.debian.tar.xz e258a1ee86bbc46f591318c66f6b28d1 14156 gnu-r optional r-bioc-purecn_1.20.0+dfsg-3_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAeP5ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGxvxAAkRnlEahC7+GWKudmRcLqjzkCw2kscjuE KR5ZHK2qvaN28XWieG2y42KrA9uRd4V7atJxay2E8ilqvJDJA9J/EwUgkFZe49El q1U5S5OxcTmQ+H7bhJ6qIvWeBSBtzlEGNOyfDjQv2sItK1P5sm1nzOiSp3LePswm niPjHl2eRAQ6Khro9o1MWv6ZKz5sie/6PFJXSyotnUIO8VBTQCvgAN2af0rkdkGU eja5CZ6kBzEosZBFl0eDnv9i90EgLP8oBm+zDiwcU8Z7GFLn67nDL+LCA96gHdkm S0QJd2q13NhzTGAMeYagzX7yNhLBspdqFc8W/4K4s4fVUrC9ePYD6dKOgV1zxvpA Lb1P1mUCywkcTeKLYusfVrxo5B0LT59xzv+CLwe5cRnNW5P2gqXUlQBMr/y+qnz3 uIfniOwQvqxv6rRfHRwrNCZCMBkn8Kpgmk/L3Ukyd+sZyyH0tNQAHtP0nsI03ON0 EFoXlxzNg8gR5EPZscZw3rsBhWCPVvT6cQjZfjOEex1SpwnRFgLRanrUY2LI+jRJ O9wbod8x3CvwgGakswzZANp2WTVZ69JSI/JDJBo4OYFajNgFdEIPSbkzbseE4Oow QGyGLKZ3wNiXgTihM+4Bz4VDNmk+cJ2cRSdj+a6jkTc+qlOIWnJpIGBSww7Ei9JX OMg4ymACteM= =nL5I -----END PGP SIGNATURE-----
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