Your message dated Sat, 22 May 2021 12:03:28 +0000
with message-id <[email protected]>
and subject line Bug#987963: fixed in pymol 2.4.0+dfsg-2
has caused the Debian Bug report #987963,
regarding pymol: flaky autopkgtest on arm64: hits autopkgtest timeout
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
987963: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=987963
Debian Bug Tracking System
Contact [email protected] with problems
--- Begin Message ---
Source: pymol
Version: 2.4.0+dfsg-1
Severity: serious
Tags: sid bullseye
X-Debbugs-CC: [email protected]
User: [email protected]
Usertags: flaky
Dear maintainer(s),
Your package has an autopkgtest, great. However, because of the failure
"caused" by glbic, I looked into the history of your autopkgtest [1] and
I noticed it fails regularly on arm64 because it hits the autopkgtest
timeout after 2:47 hours.
Because the unstable-to-testing migration software now blocks on
regressions in testing, flaky tests, i.e. tests that flip between
passing and failing without changes to the list of installed packages,
are causing people unrelated to your package to spend time on these
tests.
Paul
[1] https://ci.debian.net/packages/p/pymol/testing/arm64/
https://ci.debian.net/data/autopkgtest/testing/arm64/p/pymol/11477449/log.gz
Run 'pymol -c
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/build_peptide.py'...
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/contact.pml
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/dali.py
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/density.pml
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/groel_es.pml
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/multiclip_ray.pml
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/packing.pml
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/packsurf.pml
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/ref_frame.pml
Skip
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/ribosome.pml
<string>:1: DeprecationWarning: the imp module is deprecated in favour
of importlib; see the module's documentation for alternative uses
Run 'pymol -c
/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src/examples/cookbook/scenes2movie.pml'...
<string>:1: DeprecationWarning: the imp module is deprecated in favour
of importlib; see the module's documentation for alternative uses
autopkgtest [04:22:04]: ERROR: timed out on command "su -s /bin/bash
debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 ||
true; . ~/.profile >/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.q81vxtos/downtmp/build.HQz/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-artifacts"; export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.q81vxtos/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.q81vxtos/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=4; unset LANGUAGE
LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE LC_MONETARY LC_MESSAGES
LC_PAPER LC_NAME LC_ADDRESS LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; touch
/tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stdout
/tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stderr; bash -ec 'sh
debian/tests/call-pymol-scripts examples/ \
"(start_pymol)|(xmlrpc01)|(sd_annotate)|(povray01)|(contact)|(dali)|(density)|(groel_es)|(packing)|(packsurf)|(ref_frame)|(ribosome)|(ss_xfer)|(multiclip_ray)|(tkwindow)"'
2> >(tee -a /tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stderr >&2) >
>(tee -a /tmp/autopkgtest-lxc.q81vxtos/downtmp/command1-stdout);" (kind:
test)
autopkgtest [04:22:04]: test command1: -----------------------]
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: pymol
Source-Version: 2.4.0+dfsg-2
Done: Michael Banck <[email protected]>
We believe that the bug you reported is fixed in the latest version of
pymol, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to [email protected],
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Michael Banck <[email protected]> (supplier of updated pymol package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing [email protected])
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Sat, 22 May 2021 13:26:27 +0200
Source: pymol
Architecture: source
Version: 2.4.0+dfsg-2
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <[email protected]>
Changed-By: Michael Banck <[email protected]>
Closes: 987963
Changes:
pymol (2.4.0+dfsg-2) unstable; urgency=medium
.
* debian/tests/control: Add scenes2movie to list of skipped scripts (Closes:
#987963).
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--- End Message ---
