On 2021-06-08 11:57:13, Andreas Beckmann wrote:
> On 08/06/2021 08.27, Andreas Beckmann wrote:
> > Or, wait, easier: we can reintroduce metapackages libhdf5*-103 depending
> > on libhdf5*-103-1 and all the other packages containing libraries that
> > were in the merged package in buster.
>
> > I actually like that solution and will try to come up with a patch ;-)
>
> Here it is. Now testing upgrades ...
> There were some new symbols ... but they appeared independently of my
> changes (I built in bullseye, not sid, in case it does matter).
Thanks Andreas! Once that tests are done and the packages was uploaded,
please let me know so that I can add the appropriate hints on the
release team side.
FWIW, the symbol is a template instantiation of a function from the
standard library and should be marked as optional.
Cheers
>
> Andreas
> diff -Nru hdf5-1.10.6+repack/debian/changelog
> hdf5-1.10.6+repack/debian/changelog
> --- hdf5-1.10.6+repack/debian/changelog 2020-04-24 20:00:42.000000000
> +0200
> +++ hdf5-1.10.6+repack/debian/changelog 2021-06-08 08:57:04.000000000
> +0200
> @@ -1,3 +1,18 @@
> +hdf5 (1.10.6+repack-2.1) UNRELEASED; urgency=medium
> +
> + * Non-maintainer upload.
> + * Reintroduce libhdf5-103, libhdf5-cpp-103, libhdf5-openmpi-103,
> + libhdf5-mpich-103 as metapackages depending on the individual library
> + packages that were bundled under these names in buster. This is a
> + workaround for upgrade issues caused by libhdf5-103 (in buster) and
> + libhdf5-103-1 (in bullseye) not being co-installable. (Closes: #988722)
> + The metapackages cannot depend on libhdf5{,-openmpi,-mpich}-fortran100
> + because these had the SOVERSION bumped from 100 to 102, but luckily there
> + are no known users of these libraries in buster.
> + * Add a new symbol to libhdf5*-cpp-103-1.symbols.
> +
> + -- Andreas Beckmann <a...@debian.org> Tue, 08 Jun 2021 08:57:04 +0200
> +
> hdf5 (1.10.6+repack-2) unstable; urgency=medium
>
> * Default plugindir per flavor
> diff -Nru hdf5-1.10.6+repack/debian/control hdf5-1.10.6+repack/debian/control
> --- hdf5-1.10.6+repack/debian/control 2020-04-24 20:00:42.000000000 +0200
> +++ hdf5-1.10.6+repack/debian/control 2021-06-08 08:57:04.000000000 +0200
> @@ -28,8 +28,8 @@
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> Pre-Depends: ${misc:Pre-Depends}
> -Breaks: libhdf5-103
> -Replaces: libhdf5-103
> +Breaks: libhdf5-103 (<< 1.10.5)
> +Replaces: libhdf5-103 (<< 1.10.5)
> Description: HDF5 C runtime files - serial version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -88,14 +88,35 @@
> This package contains the high level Fortran API runtime files for serial
> platforms.
>
> +Package: libhdf5-103
> +Architecture: any
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-103-1 (= ${binary:Version}),
> +# libhdf5-fortran-102 (= ${binary:Version}),
> + libhdf5-hl-100 (= ${binary:Version}),
> + libhdf5-hl-fortran-100 (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 C runtime files - serial version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C runtime files for serial platforms.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-cpp-103-1
> Architecture: any
> Multi-Arch: same
> Section: libs
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> -Breaks: libhdf5-cpp-103
> -Replaces: libhdf5-cpp-103
> +Breaks: libhdf5-cpp-103 (<< 1.10.5)
> +Replaces: libhdf5-cpp-103 (<< 1.10.5)
> Description: HDF5 - C++ runtime files - serial version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -122,6 +143,25 @@
> This package contains the high level C++ API runtime files for serial
> platforms.
>
> +Package: libhdf5-cpp-103
> +Architecture: any
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-cpp-103-1 (= ${binary:Version}),
> + libhdf5-hl-cpp-100 (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 - C++ runtime files - serial version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C++ runtime files for serial platforms.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-dev
> Architecture: any
> Section: libdevel
> @@ -155,8 +195,8 @@
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> Pre-Depends: ${misc:Pre-Depends}
> -Breaks: libhdf5-openmpi-103
> -Replaces: libhdf5-openmpi-103
> +Breaks: libhdf5-openmpi-103 (<< 1.10.5)
> +Replaces: libhdf5-openmpi-103 (<< 1.10.5)
> Description: HDF5 - C runtime files - OpenMPI version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -215,14 +255,35 @@
> This package contains the high level Fortran API runtime files for openmpi
> platforms.
>
> +Package: libhdf5-openmpi-103
> +Architecture: any
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-openmpi-103-1 (= ${binary:Version}),
> +# libhdf5-openmpi-fortran-102 (= ${binary:Version}),
> + libhdf5-openmpi-hl-100 (= ${binary:Version}),
> + libhdf5-openmpi-hl-fortran-100 (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 - C runtime files - OpenMPI version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C runtime files for use with OpenMPI.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-openmpi-cpp-103-1
> Architecture: any
> Multi-Arch: same
> Section: libs
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> -Breaks: libhdf5-openmpi-cpp-103
> -Replaces: libhdf5-openmpi-cpp-103
> +Breaks: libhdf5-openmpi-cpp-103 (<< 1.10.5)
> +Replaces: libhdf5-openmpi-cpp-103 (<< 1.10.5)
> Description: HDF5 - C++ runtime files - OpenMPI version - unsupported
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -286,8 +347,8 @@
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> Pre-Depends: ${misc:Pre-Depends}
> -Breaks: libhdf5-mpich-103
> -Replaces: libhdf5-mpich-103
> +Breaks: libhdf5-mpich-103 (<< 1.10.5)
> +Replaces: libhdf5-mpich-103 (<< 1.10.5)
> Description: HDF5 - C runtime files - MPICH2 version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -346,14 +407,35 @@
> This package contains the high level Fortran API runtime files for mpich
> platforms.
>
> +Package: libhdf5-mpich-103
> +Architecture: any
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-mpich-103-1 (= ${binary:Version}),
> +# libhdf5-mpich-fortran-102 (= ${binary:Version}),
> + libhdf5-mpich-hl-100 (= ${binary:Version}),
> + libhdf5-mpich-hl-fortran-100 (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 - C runtime files - MPICH2 version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C runtime files for use with MPICH2.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-mpich-cpp-103-1
> Architecture: any
> Multi-Arch: same
> Section: libs
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> -Breaks: libhdf5-mpich-cpp-103
> -Replaces: libhdf5-mpich-cpp-103
> +Breaks: libhdf5-mpich-cpp-103 (<< 1.10.5)
> +Replaces: libhdf5-mpich-cpp-103 (<< 1.10.5)
> Description: HDF5 - C++ runtime files - MPICH2 version - unsupported
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> diff -Nru hdf5-1.10.6+repack/debian/control.in
> hdf5-1.10.6+repack/debian/control.in
> --- hdf5-1.10.6+repack/debian/control.in 2020-04-24 19:10:36.000000000
> +0200
> +++ hdf5-1.10.6+repack/debian/control.in 2021-06-08 08:57:04.000000000
> +0200
> @@ -28,8 +28,8 @@
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> Pre-Depends: ${misc:Pre-Depends}
> -Breaks: libhdf5-@SONAME@
> -Replaces: libhdf5-@SONAME@
> +Breaks: libhdf5-@SONAME@ (<< 1.10.5)
> +Replaces: libhdf5-@SONAME@ (<< 1.10.5)
> Description: HDF5 C runtime files - serial version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -88,14 +88,35 @@
> This package contains the high level Fortran API runtime files for serial
> platforms.
>
> +Package: libhdf5-@SONAME@
> +Architecture: any
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-@SONAME@@EXT@ (= ${binary:Version}),
> +# libhdf5-fortran-@SONAME_F@ (= ${binary:Version}),
> + libhdf5-hl-@SONAME_HL@ (= ${binary:Version}),
> + libhdf5-hl-fortran-@SONAME_HL_F@ (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 C runtime files - serial version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C runtime files for serial platforms.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-cpp-@SONAME_CXX@@EXT@
> Architecture: any
> Multi-Arch: same
> Section: libs
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> -Breaks: libhdf5-cpp-@SONAME_CXX@
> -Replaces: libhdf5-cpp-@SONAME_CXX@
> +Breaks: libhdf5-cpp-@SONAME_CXX@ (<< 1.10.5)
> +Replaces: libhdf5-cpp-@SONAME_CXX@ (<< 1.10.5)
> Description: HDF5 - C++ runtime files - serial version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -122,6 +143,25 @@
> This package contains the high level C++ API runtime files for serial
> platforms.
>
> +Package: libhdf5-cpp-@SONAME_CXX@
> +Architecture: any
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-cpp-@SONAME_CXX@@EXT@ (= ${binary:Version}),
> + libhdf5-hl-cpp-@SONAME_HL_CXX@ (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 - C++ runtime files - serial version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C++ runtime files for serial platforms.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-dev
> Architecture: any
> Section: libdevel
> @@ -155,8 +195,8 @@
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> Pre-Depends: ${misc:Pre-Depends}
> -Breaks: libhdf5-openmpi-@SONAME@
> -Replaces: libhdf5-openmpi-@SONAME@
> +Breaks: libhdf5-openmpi-@SONAME@ (<< 1.10.5)
> +Replaces: libhdf5-openmpi-@SONAME@ (<< 1.10.5)
> Description: HDF5 - C runtime files - OpenMPI version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -215,14 +255,35 @@
> This package contains the high level Fortran API runtime files for openmpi
> platforms.
>
> +Package: libhdf5-openmpi-@SONAME@
> +Architecture: @OMPIARCHS@
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-openmpi-@SONAME@@EXT@ (= ${binary:Version}),
> +# libhdf5-openmpi-fortran-@SONAME_F@ (= ${binary:Version}),
> + libhdf5-openmpi-hl-@SONAME_HL@ (= ${binary:Version}),
> + libhdf5-openmpi-hl-fortran-@SONAME_HL_F@ (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 - C runtime files - OpenMPI version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C runtime files for use with OpenMPI.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-openmpi-cpp-@SONAME_CXX@@EXT@
> Architecture: any
> Multi-Arch: same
> Section: libs
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> -Breaks: libhdf5-openmpi-cpp-@SONAME_CXX@
> -Replaces: libhdf5-openmpi-cpp-@SONAME_CXX@
> +Breaks: libhdf5-openmpi-cpp-@SONAME_CXX@ (<< 1.10.5)
> +Replaces: libhdf5-openmpi-cpp-@SONAME_CXX@ (<< 1.10.5)
> Description: HDF5 - C++ runtime files - OpenMPI version - unsupported
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -286,8 +347,8 @@
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> Pre-Depends: ${misc:Pre-Depends}
> -Breaks: libhdf5-mpich-@SONAME@
> -Replaces: libhdf5-mpich-@SONAME@
> +Breaks: libhdf5-mpich-@SONAME@ (<< 1.10.5)
> +Replaces: libhdf5-mpich-@SONAME@ (<< 1.10.5)
> Description: HDF5 - C runtime files - MPICH2 version
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> @@ -346,14 +407,35 @@
> This package contains the high level Fortran API runtime files for mpich
> platforms.
>
> +Package: libhdf5-mpich-@SONAME@
> +Architecture: @MPICHARCHS@
> +Multi-Arch: same
> +Section: libs
> +Depends: libhdf5-mpich-@SONAME@@EXT@ (= ${binary:Version}),
> +# libhdf5-mpich-fortran-@SONAME_F@ (= ${binary:Version}),
> + libhdf5-mpich-hl-@SONAME_HL@ (= ${binary:Version}),
> + libhdf5-mpich-hl-fortran-@SONAME_HL_F@ (= ${binary:Version}),
> + ${misc:Depends}
> +Description: HDF5 - C runtime files - MPICH2 version (metapackage)
> + Hierarchical Data Format 5 (HDF5) is a file format and library for
> + storing scientific data. HDF5 was designed and implemented to address
> + the deficiencies of HDF4.x. It has a more powerful and flexible data
> + model, supports files larger than 2 GB, and supports parallel I/O.
> + .
> + This package contains the C runtime files for use with MPICH2.
> + .
> + This metapackage helps upgrading from the single package bundling
> + multiple libraries in buster to the individiual library packages in
> + bullseye. It can be safely removed.
> +
> Package: libhdf5-mpich-cpp-@SONAME_CXX@@EXT@
> Architecture: any
> Multi-Arch: same
> Section: libs
> Depends: ${shlibs:Depends},
> ${misc:Depends}
> -Breaks: libhdf5-mpich-cpp-@SONAME_CXX@
> -Replaces: libhdf5-mpich-cpp-@SONAME_CXX@
> +Breaks: libhdf5-mpich-cpp-@SONAME_CXX@ (<< 1.10.5)
> +Replaces: libhdf5-mpich-cpp-@SONAME_CXX@ (<< 1.10.5)
> Description: HDF5 - C++ runtime files - MPICH2 version - unsupported
> Hierarchical Data Format 5 (HDF5) is a file format and library for
> storing scientific data. HDF5 was designed and implemented to address
> diff -Nru hdf5-1.10.6+repack/debian/libhdf5-cpp-103-1.symbols
> hdf5-1.10.6+repack/debian/libhdf5-cpp-103-1.symbols
> --- hdf5-1.10.6+repack/debian/libhdf5-cpp-103-1.symbols 2020-04-24
> 19:10:36.000000000 +0200
> +++ hdf5-1.10.6+repack/debian/libhdf5-cpp-103-1.symbols 2021-06-08
> 08:57:04.000000000 +0200
> @@ -1055,6 +1055,7 @@
> HDF5_SERIAL_1.8.7@HDF5_SERIAL_1.8.7 1.10.5
> HDF5_SERIAL_1.8.8@HDF5_SERIAL_1.8.8 1.10.5
> HDF5_SERIAL_1.8.9@HDF5_SERIAL_1.8.9 1.10.5
> + _ZNKSt5ctypeIcE8do_widenEc@Base 1.10.6
> (optional|c++)"non-virtual thunk to H5::Attribute::close()@HDF5_CPP_1.8.11"
> 1.10.5
> (optional|c++)"non-virtual thunk to H5::Attribute::fromClass[abi:cxx11]()
> const@HDF5_CPP_1.10.1" 1.10.5
> (optional|c++)"non-virtual thunk to H5::Attribute::getId()
> const@HDF5_CPP_1.8.9" 1.10.5
> diff -Nru hdf5-1.10.6+repack/debian/libhdf5-mpich-cpp-103-1.symbols
> hdf5-1.10.6+repack/debian/libhdf5-mpich-cpp-103-1.symbols
> --- hdf5-1.10.6+repack/debian/libhdf5-mpich-cpp-103-1.symbols 2020-04-24
> 19:10:36.000000000 +0200
> +++ hdf5-1.10.6+repack/debian/libhdf5-mpich-cpp-103-1.symbols 2021-06-08
> 08:57:04.000000000 +0200
> @@ -1055,6 +1055,7 @@
> HDF5_MPI_1.8.7@HDF5_MPI_1.8.7 1.10.5
> HDF5_MPI_1.8.8@HDF5_MPI_1.8.8 1.10.5
> HDF5_MPI_1.8.9@HDF5_MPI_1.8.9 1.10.5
> + _ZNKSt5ctypeIcE8do_widenEc@Base 1.10.6
> (optional|c++)"non-virtual thunk to
> H5::Attribute::close()@HDF5_CPP_MPI_1.8.11" 1.10.5
> (optional|c++)"non-virtual thunk to H5::Attribute::fromClass[abi:cxx11]()
> const@HDF5_CPP_MPI_1.10.1" 1.10.5
> (optional|c++)"non-virtual thunk to H5::Attribute::getId()
> const@HDF5_CPP_MPI_1.8.9" 1.10.5
> diff -Nru hdf5-1.10.6+repack/debian/libhdf5-openmpi-cpp-103-1.symbols
> hdf5-1.10.6+repack/debian/libhdf5-openmpi-cpp-103-1.symbols
> --- hdf5-1.10.6+repack/debian/libhdf5-openmpi-cpp-103-1.symbols
> 2020-04-24 19:10:36.000000000 +0200
> +++ hdf5-1.10.6+repack/debian/libhdf5-openmpi-cpp-103-1.symbols
> 2021-06-08 08:57:04.000000000 +0200
> @@ -1243,6 +1243,7 @@
> #MISSING: 1.10.6# (optional|c++)"MPI::Win::Unlock(int)
> const@HDF5_CPP_MPI_1.10.5" 1.10.5
> #MISSING: 1.10.6# (optional|c++)"MPI::Win::Wait() const@HDF5_CPP_MPI_1.10.5"
> 1.10.5
> #MISSING: 1.10.6# (optional|c++)"MPI::Win::~Win()@HDF5_CPP_MPI_1.10.5" 1.10.5
> + _ZNKSt5ctypeIcE8do_widenEc@Base 1.10.6
> (optional|c++)"non-virtual thunk to
> H5::Attribute::close()@HDF5_CPP_MPI_1.8.11" 1.10.5
> (optional|c++)"non-virtual thunk to H5::Attribute::fromClass[abi:cxx11]()
> const@HDF5_CPP_MPI_1.10.1" 1.10.5
> (optional|c++)"non-virtual thunk to H5::Attribute::getId()
> const@HDF5_CPP_MPI_1.8.9" 1.10.5
--
Sebastian Ramacher
