Source: cyvcf2 Version: 0.30.11-1 Severity: serious Tags: ftbfs patch Justification: FTBFS
https://buildd.debian.org/status/fetch.php?pkg=cyvcf2&arch=amd64&ver=0.30.11-1%2Bb1&stamp=1637483151&raw=0 Tests fail with: ====================================================================== ERROR: cyvcf2.tests.test_reader.test_info_dict ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 226, in test_info_dict toks = _get_line_for(variant) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 459, in _get_line_for for i, line in enumerate(gzip.open(VCF_PATH), start=1): ValueError: readline of closed file ====================================================================== ERROR: cyvcf2.tests.test_reader.test_gt_types ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/case.py", line 197, in runTest self.test(*self.arg) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 518, in test_gt_types o = _get_samples(variant) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 485, in _get_samples toks = _get_line_for(v) File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_cyvcf2/build/cyvcf2/tests/test_reader.py", line 459, in _get_line_for for i, line in enumerate(gzip.open(VCF_PATH), start=1): ValueError: readline of closed file ---------------------------------------------------------------------- Ran 95 tests in 0.647s Should be resolved by applying this patch: https://github.com/brentp/cyvcf2/pull/225 I'll do a 0-day NMU for it. SR
