Source: python-anndata Version: 0.7.5+ds-3 Severity: serious Dear Maintainer,
python-anndata FTBFS, it probably needs changes with new sklearn. Log pasted below. Regards, Nilesh copying anndata/tests/data/excel.xlsx -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_anndata/build/anndata/tests/data dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:285: cp -R /<<PKGBUILDDIR>>/anndata.egg-info /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_anndata/build I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_anndata/build; python3.10 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.10.0+, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.10 cachedir: .pytest_cache rootdir: /<<PKGBUILDDIR>>, configfile: pyproject.toml plugins: cov-3.0.0 collecting ... collected 1449 items / 2 errors / 1447 selected ==================================== ERRORS ==================================== _ ERROR collecting .pybuild/cpython3_3.10_anndata/build/anndata/tests/test_inplace_subset.py _ anndata/tests/test_inplace_subset.py:3: in <module> from sklearn.utils.testing import assert_array_equal E ModuleNotFoundError: No module named 'sklearn.utils.testing' _ ERROR collecting .pybuild/cpython3_3.10_anndata/build/anndata/tests/test_inplace_subset.py _ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_anndata/build/anndata/tests/test_inplace_subset.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.10/importlib/__init__.py:126: in import_module return _bootstrap._gcd_import(name[level:], package, level) anndata/tests/test_inplace_subset.py:3: in <module> from sklearn.utils.testing import assert_array_equal E ModuleNotFoundError: No module named 'sklearn.utils.testing' =============================== warnings summary =============================== ../../../../../../usr/lib/python3/dist-packages/natsort/compat/fastnumbers.py:7 /usr/lib/python3/dist-packages/natsort/compat/fastnumbers.py:7: DeprecationWarning: The distutils package is deprecated and slated for removal in Python 3.12. Use setuptools or check PEP 632 for potential alternatives from distutils.version import StrictVersion anndata/core.py:3 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_anndata/build/anndata/core.py:3: DeprecationWarning: Please only import from anndata, not anndata.core warn("Please only import from anndata, not anndata.core", DeprecationWarning) anndata/readwrite.py:3 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_anndata/build/anndata/readwrite.py:3: DeprecationWarning: Please only import from anndata, not anndata.readwrite warn("Please only import from anndata, not anndata.readwrite", DeprecationWarning) -- Docs: https://docs.pytest.org/en/stable/warnings.html =========================== short test summary info ============================ ERROR anndata/tests/test_inplace_subset.py - ModuleNotFoundError: No module n... ERROR anndata/tests/test_inplace_subset.py !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! ======================== 3 warnings, 2 errors in 1.71s ========================= E: pybuild pybuild:354: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.10_anndata/build; python3.10 -m pytest -v I: pybuild pybuild:285: cp -R /<<PKGBUILDDIR>>/anndata.egg-info /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_anndata/build I: pybuild base:237: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_anndata/build; python3.9 -m pytest -v ============================= test session starts ============================== platform linux -- Python 3.9.9, pytest-6.2.5, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache rootdir: /<<PKGBUILDDIR>>, configfile: pyproject.toml plugins: cov-3.0.0 collecting ... collected 1449 items / 2 errors / 1447 selected ==================================== ERRORS ==================================== _ ERROR collecting .pybuild/cpython3_3.9_anndata/build/anndata/tests/test_inplace_subset.py _ anndata/tests/test_inplace_subset.py:3: in <module> from sklearn.utils.testing import assert_array_equal E ModuleNotFoundError: No module named 'sklearn.utils.testing' _ ERROR collecting .pybuild/cpython3_3.9_anndata/build/anndata/tests/test_inplace_subset.py _ ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_anndata/build/anndata/tests/test_inplace_subset.py'. Hint: make sure your test modules/packages have valid Python names. Traceback: /usr/lib/python3.9/importlib/__init__.py:127: in import_module return _bootstrap._gcd_import(name[level:], package, level) anndata/tests/test_inplace_subset.py:3: in <module> from sklearn.utils.testing import assert_array_equal E ModuleNotFoundError: No module named 'sklearn.utils.testing' =============================== warnings summary =============================== anndata/core.py:3 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_anndata/build/anndata/core.py:3: DeprecationWarning: Please only import from anndata, not anndata.core warn("Please only import from anndata, not anndata.core", DeprecationWarning) anndata/readwrite.py:3 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_anndata/build/anndata/readwrite.py:3: DeprecationWarning: Please only import from anndata, not anndata.readwrite warn("Please only import from anndata, not anndata.readwrite", DeprecationWarning) -- Docs: https://docs.pytest.org/en/stable/warnings.html =========================== short test summary info ============================ ERROR anndata/tests/test_inplace_subset.py - ModuleNotFoundError: No module n... ERROR anndata/tests/test_inplace_subset.py !!!!!!!!!!!!!!!!!!! Interrupted: 2 errors during collection !!!!!!!!!!!!!!!!!!!! ======================== 2 warnings, 2 errors in 1.89s ========================= E: pybuild pybuild:354: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_anndata/build; python3.9 -m pytest -v dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.10 3.9" returned exit code 13 -- System Information: Debian Release: bookworm/sid APT prefers testing APT policy: (500, 'testing') Architecture: amd64 (x86_64) Kernel: Linux 5.14.0-2-amd64 (SMP w/8 CPU threads) Kernel taint flags: TAINT_WARN, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled