Your message dated Fri, 14 Jan 2022 09:03:32 +0000
with message-id <e1n8iue-0009ra...@fasolo.debian.org>
and subject line Bug#1000577: fixed in abyss 2.3.4+dfsg-1
has caused the Debian Bug report #1000577,
regarding abyss: autopkgtest regression on armhf and i386: Floating point
exception
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
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--
1000577: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1000577
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: abyss
Version: 2.3.3-2
X-Debbugs-CC: debian...@lists.debian.org
Severity: serious
User: debian...@lists.debian.org
Usertags: regression
Dear maintainer(s),
With a recent upload of abyss the autopkgtest of abyss fails in testing
when that autopkgtest is run with the binary packages of abyss from
unstable on armhf and i386. It passes when run with only packages from
testing. In tabular form:
pass fail
abyss from testing 2.3.3-2
all others from testing from testing
I copied some of the output at the bottom of this report. Seems like a
32 bit issue?
Currently this regression is blocking the migration to testing [1]. Can
you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=abyss
https://ci.debian.net/data/autopkgtest/testing/armhf/a/abyss/16976314/log.gz
abyss-stack-size 65536 abyss-bloom-dbg -k25 -q3 -b1G -j2
test-data/reads1.fastq test-data/reads2.fastq > test-1.fa
Running with max stack size of 65536 KB: abyss-bloom-dbg -k25 -q3 -b1G
-j2 test-data/reads1.fastq test-data/reads2.fastq
AdjList -k25 -m0 --dot test-1.fa >test-1.dot
abyss-rresolver-short -b1G -j2 -k25 \
-h test-1-rr --dot -c test-1-rr.fa -g test-1-rr.dot test-1.fa test-1.dot
test-data/reads1.fastq test-data/reads2.fastq make: ***
[/usr/bin/abyss-pe:585: test-1-rr.dot] Floating point exception
autopkgtest [23:11:23]: test run-unit-test
OpenPGP_signature
Description: OpenPGP digital signature
--- End Message ---
--- Begin Message ---
Source: abyss
Source-Version: 2.3.4+dfsg-1
Done: Andreas Tille <ti...@debian.org>
We believe that the bug you reported is fixed in the latest version of
abyss, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1000...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andreas Tille <ti...@debian.org> (supplier of updated abyss package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 14 Jan 2022 09:36:02 +0100
Source: abyss
Architecture: source
Version: 2.3.4+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Andreas Tille <ti...@debian.org>
Closes: 1000577
Changes:
abyss (2.3.4+dfsg-1) unstable; urgency=medium
.
* Upstream declares that only 64bit architectures are supported
(https://github.com/bcgsc/abyss/issues/384) thus restricting
architectures accordingly
Closes: #1000577
* Exclude i386 from salsa-ci
* New upstream version
* Add missing build dependency on dh addon.
* Exclude external files from RResolver/btllib/external/sdsl-lite
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abyss_2.3.4+dfsg-1.debian.tar.xz
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Files:
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abyss_2.3.4+dfsg-1.debian.tar.xz
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