Your message dated Sat, 28 May 2022 08:39:31 +0000
with message-id <e1nuryt-000bwl...@fasolo.debian.org>
and subject line Bug#997488: fixed in q2cli 2021.8.0-2
has caused the Debian Bug report #997488,
regarding q2cli: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i
python{version} -p 3.9 returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
997488: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997488
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: q2cli
Version: 2021.8.0-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20211023 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> =========================== short test summary info
> ============================
> FAILED q2cli/tests/test_cli.py::CliTests::test_action_parameter_types -
> Asser...
> FAILED q2cli/tests/test_cli.py::CliTests::test_deprecated_help_text -
> Asserti...
> FAILED q2cli/tests/test_cli.py::CliTests::test_examples - AssertionError: 1
> != 0
> FAILED q2cli/tests/test_cli.py::CliTests::test_extract - AssertionError: 1 != > 0
> FAILED q2cli/tests/test_cli.py::CliTests::test_info - AssertionError: 1 != 0
> FAILED q2cli/tests/test_cli.py::CliTests::test_no_examples - AssertionError:
> ...
> FAILED q2cli/tests/test_cli.py::CliTests::test_qza_extension -
> AssertionError...
> FAILED q2cli/tests/test_cli.py::CliTests::test_qzv_extension -
> AssertionError...
> FAILED q2cli/tests/test_cli.py::CliTests::test_run_deprecated_gets_warning_msg
> FAILED q2cli/tests/test_cli.py::CliTests::test_show_importable_formats -
> Asse...
> FAILED q2cli/tests/test_cli.py::CliTests::test_show_importable_types -
> Assert...
> FAILED q2cli/tests/test_cli.py::CliTests::test_split_ints - AssertionError:
> 1...
> FAILED q2cli/tests/test_cli.py::CliTests::test_syntax_error_in_env -
> Assertio...
> FAILED q2cli/tests/test_cli.py::CliTests::test_validate_max -
> AssertionError:...
> FAILED q2cli/tests/test_cli.py::CliTests::test_validate_min -
> AssertionError:...
> FAILED q2cli/tests/test_cli.py::CliTests::test_variadic_inputs -
> AssertionErr...
> FAILED q2cli/tests/test_cli.py::CliTests::test_verbose_shows_stacktrace -
> Ass...
> FAILED q2cli/tests/test_cli.py::CliTests::test_with_parameters_only -
> Asserti...
> FAILED q2cli/tests/test_cli.py::CliTests::test_without_inputs_or_parameters
> FAILED
> q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_all_optional_artifacts_provided
> FAILED
> q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_no_optional_artifacts_provided
> FAILED
> q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_one_optional_artifact_provided
> FAILED
> q2cli/tests/test_cli.py::TestOptionalArtifactSupport::test_optional_artifact_type_mismatch
> FAILED
> q2cli/tests/test_cli.py::TestMetadataSupport::test_invalid_metadata_merge
> FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_multiple_metadata
> FAILED
> q2cli/tests/test_cli.py::TestMetadataSupport::test_optional_metadata_missing
> FAILED
> q2cli/tests/test_cli.py::TestMetadataSupport::test_required_metadata_missing
> FAILED q2cli/tests/test_cli.py::TestMetadataSupport::test_single_metadata -
> A...
> FAILED
> q2cli/tests/test_cli.py::TestMetadataSupport::test_single_metadata_alt_id_header
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_categorical_metadata_column
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_categorical_metadata_column_type_mismatch
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_multiple_metadata
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_multiple_metadata_column
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_numeric_metadata_column
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_numeric_metadata_column_type_mismatch
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_optional_column_without_metadata
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_optional_metadata_missing
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_optional_metadata_without_column
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_required_missing
> FAILED
> q2cli/tests/test_cli.py::TestMetadataColumnSupport::test_single_metadata
> FAILED q2cli/tests/test_core.py::TestOption::test_repeated_action_flag -
> Asse...
> FAILED q2cli/tests/test_core.py::TestOption::test_repeated_action_option -
> As...
> FAILED q2cli/tests/test_core.py::TestOption::test_repeated_builtin_flag -
> Ass...
> FAILED q2cli/tests/test_core.py::TestOption::test_repeated_builtin_option -
> A...
> FAILED
> q2cli/tests/test_core.py::TestOption::test_repeated_eager_option_with_callback
> FAILED q2cli/tests/test_core.py::TestOption::test_repeated_multiple_option -
> ...
> FAILED q2cli/tests/test_dev.py::TestDev::test_export_default_theme -
> Assertio...
> FAILED q2cli/tests/test_dev.py::TestDev::test_import_theme - AssertionError:
> ...
> FAILED q2cli/tests/test_dev.py::TestDev::test_reset_theme - AssertionError:
> 1...
> FAILED
> q2cli/tests/test_tools.py::TestCastMetadata::test_complete_successful_run
> FAILED q2cli/tests/test_tools.py::TestCastMetadata::test_error_on_extra -
> Ass...
> FAILED q2cli/tests/test_tools.py::TestCastMetadata::test_error_on_missing -
> A...
> FAILED q2cli/tests/test_tools.py::TestCastMetadata::test_extra_columns_removed
> FAILED
> q2cli/tests/test_tools.py::TestCastMetadata::test_input_duplicate_columns
> FAILED
> q2cli/tests/test_tools.py::TestCastMetadata::test_input_invalid_cast_format_extra_colon
> FAILED
> q2cli/tests/test_tools.py::TestCastMetadata::test_input_invalid_cast_format_missing_colon
> FAILED
> q2cli/tests/test_tools.py::TestCastMetadata::test_input_invalid_column_type
> FAILED q2cli/tests/test_tools.py::TestCastMetadata::test_valid_column_types
> FAILED q2cli/tests/test_tools.py::TestCastMetadata::test_write_to_stdout -
> As...
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_artifact_no_metadata
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_artifact_w_metadata
> FAILED q2cli/tests/test_tools.py::TestInspectMetadata::test_bad_metadata_file
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_path_file_is_replaced
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_to_dir_no_format
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_to_dir_w_format
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_to_dir_without_format_success_message
> FAILED q2cli/tests/test_tools.py::TestInspectMetadata::test_export_to_file -
> ...
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_to_file_creates_directories
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_to_file_with_format_success_message
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_visualization_to_dir
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_visualization_to_dir_success_message
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_export_visualization_w_format
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_extract_to_dir_success_message
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_import_from_directory_without_format_success_message
> FAILED
> q2cli/tests/test_tools.py::TestInspectMetadata::test_import_from_file_with_format_success_message
> FAILED q2cli/tests/test_tools.py::TestInspectMetadata::test_merged_metadata
> FAILED q2cli/tests/test_tools.py::TestInspectMetadata::test_metadata_file -
> A...
> FAILED q2cli/tests/test_tools.py::TestInspectMetadata::test_tsv -
> AssertionEr...
> FAILED q2cli/tests/test_tools.py::TestInspectMetadata::test_visualization -
> A...
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_artifact_no_metadata
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_artifact_w_metadata
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_bad_metadata_file
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_dir_format
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_dir_format_nested
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_file_format
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_path_file_is_replaced
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_to_dir_no_format
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_to_dir_w_format
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_to_dir_without_format_success_message
> FAILED q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_to_file
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_to_file_creates_directories
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_to_file_with_format_success_message
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_to_filename_without_path
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_visualization_to_dir
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_visualization_to_dir_success_message
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_export_visualization_w_format
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_extract_to_dir_success_message
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_import_from_directory_without_format_success_message
> FAILED
> q2cli/tests/test_tools.py::TestExportToFileFormat::test_import_from_file_with_format_success_message
> FAILED q2cli/tests/test_tools.py::TestExportToFileFormat::test_merged_metadata
> FAILED q2cli/tests/test_tools.py::TestExportToFileFormat::test_metadata_file
> FAILED q2cli/tests/test_tools.py::TestExportToFileFormat::test_tsv -
> Assertio...
> FAILED q2cli/tests/test_tools.py::TestExportToFileFormat::test_visualization
> ======================== 103 failed, 16 passed in 3.65s
> ========================
> E: pybuild pybuild:354: test: plugin distutils failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m pytest
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9
> returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2021/10/23/q2cli_2021.8.0-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: q2cli
Source-Version: 2021.8.0-2
Done: Nilesh Patra <nil...@debian.org>
We believe that the bug you reported is fixed in the latest version of
q2cli, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 997...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nilesh Patra <nil...@debian.org> (supplier of updated q2cli package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Sat, 28 May 2022 13:25:10 +0530
Source: q2cli
Architecture: source
Version: 2021.8.0-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team
<debian-med-packag...@lists.alioth.debian.org>
Changed-By: Nilesh Patra <nil...@debian.org>
Closes: 997488
Changes:
q2cli (2021.8.0-2) unstable; urgency=medium
.
* Team upload.
* Modify upstream changes to make package compat
with click 8.0 (Closes: #997488)
* Bump Standards-Version to 4.6.1 (no changes needed)
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Files:
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3c51d5aaafd8a43fce1f64b6ea674268 8732 science optional
q2cli_2021.8.0-2.debian.tar.xz
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q2cli_2021.8.0-2_amd64.buildinfo
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