Your message dated Tue, 07 Feb 2023 07:50:10 +0000
with message-id <e1ppijy-003sie...@fasolo.debian.org>
and subject line Bug#997475: fixed in hyperspy 1.7.3-1
has caused the Debian Bug report #997475,
regarding hyperspy: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i
python{version} -p 3.9 returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
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--
997475: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=997475
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: hyperspy
Version: 1.6.1-1
Severity: serious
Justification: FTBFS
Tags: bookworm sid ftbfs
User: lu...@debian.org
Usertags: ftbfs-20211023 ftbfs-bookworm
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> =========================== short test summary info
> ============================
> SKIPPED [1] hyperspy/tests/io/test_mrcz.py:32: mrcz not installed
> SKIPPED [1] hyperspy/tests/io/test_phenom.py:26: skipping test_phenom tests,
> requires imagecodecs
> SKIPPED [1] hyperspy/tests/io/test_usid.py:10: pyUSID not installed
> SKIPPED [1] hyperspy/tests/datasets/test_eelsdb.py:39: Unable to connect to
> EELSdb
> SKIPPED [1] hyperspy/tests/datasets/test_eelsdb.py:95: Unable to connect to
> EELSdb
> SKIPPED [1] hyperspy/tests/drawing/test_mpl_testing_setup.py:48: No --mpl
> command line option
> SKIPPED [1] hyperspy/tests/io/test_edax.py:71: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:83: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:114: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:124: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:151: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:161: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:190: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:200: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:227: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:259: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:287: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:309: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:314: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:352: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:384: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:412: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:434: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_edax.py:439: download of EDAX test files
> failed: HTTPSConnectionPool(host='github.com', port=443): Max retries
> exceeded with url:
> /hyperspy/hyperspy/blob/e7a323a3bb9b237c24bd9267d2cc4fcb31bb99f3/hyperspy/tests/io/edax_files.zip?raw=true
> (Caused by ProxyError('Cannot connect to proxy.',
> NewConnectionError('<urllib3.connection.HTTPSConnection object at
> 0x7fd78e011850>: Failed to establish a new connection: [Errno 111] Connection
> refused')))
> SKIPPED [1] hyperspy/tests/io/test_bruker.py:191: could not import
> 'hyperspy.io_plugins.unbcf_fast': No module named
> 'hyperspy.io_plugins.unbcf_fast'
> SKIPPED [1] hyperspy/tests/io/test_tiff.py:609: imagecodecs is required
> SKIPPED [1] hyperspy/tests/signal/test_2D.py:337: LazySignals do not support
> folding
> SKIPPED [1] hyperspy/tests/signal/test_2D.py:345: LazySignals do not support
> folding
> SKIPPED [4] hyperspy/tests/signal/test_1D_tools.py:266: Ignored on
> non-Windows OS
> SKIPPED [32] hyperspy/tests/signal/test_find_peaks2D.py:111: Parallel=True is
> ignored for lazy signal.
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:42: Inplace not
> supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:64: Inplace not
> supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:107: Inplace not
> supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_operators.py:118: Inplace not
> supported by LazySignals
> SKIPPED [1] hyperspy/tests/signal/test_signal_subclass_conversion.py:97: Dask
> array flags not supported
> SKIPPED [1] hyperspy/tests/signal/test_signal_subclass_conversion.py:114:
> Dask array flags not supported
> SKIPPED [1] hyperspy/tests/signal/test_map_method.py:339: Not compatible with
> lazy signal.
> SKIPPED [1] hyperspy/tests/signal/test_tools.py:207: LazySignals do not
> support masked arrays
> SKIPPED [1] hyperspy/tests/signal/test_tools.py:241: LazySignals do not
> support masked arrays
> SKIPPED [1] hyperspy/tests/signal/test_tools.py:261: LazySignals do not
> support masked arrays
> SKIPPED [1] hyperspy/tests/signal/test_transpose.py:119: LazySignal
> optimization is tested in test_lazy_tranpose_rechunk
> XFAIL hyperspy/tests/drawing/test_utils.py::test_create_figure
> reason: agg backend does not support on_close event.
> XFAIL
> hyperspy/tests/io/test_hdf5.py::TestLoadingNewSavedMetadata::test_binary_string
> dill is not guaranteed to load across Python versions
> XPASS hyperspy/tests/samfire/test_samfire.py::test_multiprocessed Sometimes
> the number of failed pixels > 3 when using multiprocessing. Unknown reason
> FAILED hyperspy/tests/io/test_blockfile.py::test_load_readonly - Failed: DID
> ...
> = 1 failed, 3722 passed, 75 skipped, 2 xfailed, 1 xpassed, 428 warnings in
> 229.61s (0:03:49) =
> E: pybuild pybuild:354: test: plugin distutils failed with: exit code=1: cd
> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_hyperspy/build; python3.9 -m pytest
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p 3.9
> returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2021/10/23/hyperspy_1.6.1-1_unstable.log
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please marking it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
--- End Message ---
--- Begin Message ---
Source: hyperspy
Source-Version: 1.7.3-1
Done: Enrico Zini <enr...@debian.org>
We believe that the bug you reported is fixed in the latest version of
hyperspy, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 997...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Enrico Zini <enr...@debian.org> (supplier of updated hyperspy package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 1.8
Date: Tue, 07 Feb 2023 08:20:22 +0100
Source: hyperspy
Architecture: source
Version: 1.7.3-1
Distribution: unstable
Urgency: medium
Maintainer: Debian PaN Maintainers
<debian-pan-maintain...@alioth-lists.debian.net>
Changed-By: Enrico Zini <enr...@debian.org>
Closes: 997475 1018373 1028548
Changes:
hyperspy (1.7.3-1) unstable; urgency=medium
.
* New upstream version 1.7.3. Closes: #1028548
* Updated standards-version, no changes required
* Added debian/patches/fix-typo-import-scipy-datasets.diff to import a still
unreleased fix from upstream
* Removed nose dependency, not needed since hyperspy v1.2. Closes: #1018373
* Disable tests that require downloading datasets from the internet. Closes:
#997475
Checksums-Sha1:
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8e0c12ca1a6a18bb8c297ece182d234c6cc2ecfe 46334973 hyperspy_1.7.3.orig.tar.gz
02a1a48095926254717b7cd33da8a9ef2bd12d8a 3960 hyperspy_1.7.3-1.debian.tar.xz
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Checksums-Sha256:
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hyperspy_1.7.3-1.dsc
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hyperspy_1.7.3-1_source.buildinfo
Files:
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43473fc0e868176a41900b5d6df20cee 46334973 python optional
hyperspy_1.7.3.orig.tar.gz
375b8b91208f93eea30f9f1984910c65 3960 python optional
hyperspy_1.7.3-1.debian.tar.xz
20e46cb48e2f709220b0775fe84bb0a5 6280 python optional
hyperspy_1.7.3-1_source.buildinfo
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