Your message dated Fri, 23 Jun 2023 08:35:56 +0000
with message-id <e1qccgq-000h6g...@fasolo.debian.org>
and subject line Bug#1037463: fixed in macromoleculebuilder 4.0.0+dfsg-3
has caused the Debian Bug report #1037463,
regarding macromoleculebuilder: FTBFS with gemmi 0.6.2+ds-1
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact ow...@bugs.debian.org
immediately.)
--
1037463: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1037463
Debian Bug Tracking System
Contact ow...@bugs.debian.org with problems
--- Begin Message ---
Source: macromoleculebuilder
Severity: serious
Version: 4.0.0+dfsg-2
Hello,
macromoleculebuilder FTBFS after recent update of gemmi to 0.6.2+ds-1:
/home/merkys/macromoleculebuilder-4.0.0+dfsg/src/CifOutput.cpp: In
function 'void SimTK::CIFOut::reWriteOutCif(const gemmi::Model&, const
std::string&, const std::string&, ParameterReader&, const
SimTK::CompoundSystem&, bool)':
/home/merkys/macromoleculebuilder-4.0.0+dfsg/src/CifOutput.cpp:113:81:
error: cannot bind rvalue reference of type 'gemmi::cif::Document&&' to
lvalue of type 'gemmi::cif::Document'
113 | gemmi::Structure myTrajectoryOutputFile =
gemmi::make_structure ( doc );
|
^~~
The issue is better fixed upstream, I will forward the report. In the
meantime it is OK to remove macromoleculebuilder from testing to not
obstruct the upcoming openmm transition.
Andrius
--- End Message ---
--- Begin Message ---
Source: macromoleculebuilder
Source-Version: 4.0.0+dfsg-3
Done: Andrius Merkys <mer...@debian.org>
We believe that the bug you reported is fixed in the latest version of
macromoleculebuilder, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1037...@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Andrius Merkys <mer...@debian.org> (supplier of updated macromoleculebuilder
package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmas...@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Fri, 23 Jun 2023 01:37:57 -0400
Source: macromoleculebuilder
Architecture: source
Version: 4.0.0+dfsg-3
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-de...@lists.alioth.debian.org>
Changed-By: Andrius Merkys <mer...@debian.org>
Closes: 1037463
Changes:
macromoleculebuilder (4.0.0+dfsg-3) unstable; urgency=medium
.
* Fix gemmi 0.6.2 support (Closes: #1037463)
* Update standards version to 4.6.2, no changes needed.
Checksums-Sha1:
be6010b5eca7704bded5f58bf4c02a3fb604d44d 2439
macromoleculebuilder_4.0.0+dfsg-3.dsc
3ec554546b6f7771683933a1361395b3d1041ae8 5516
macromoleculebuilder_4.0.0+dfsg-3.debian.tar.xz
876495039493727e2142454ba68ecc2dd224fc29 7561
macromoleculebuilder_4.0.0+dfsg-3_source.buildinfo
Checksums-Sha256:
44beb49968252728871d49265ade6936c3d75ba566cc5bd566e18949d76f18af 2439
macromoleculebuilder_4.0.0+dfsg-3.dsc
dbfc562c55656860cd3e98291291175bee9b654847aab244b995dedf79dad3a2 5516
macromoleculebuilder_4.0.0+dfsg-3.debian.tar.xz
144ab44a9133692772d10dd5fcd705b64668e2fd0a8cc5afc62c7f05497ac33f 7561
macromoleculebuilder_4.0.0+dfsg-3_source.buildinfo
Files:
a66e5d9755ca20cd517af307c179947d 2439 science optional
macromoleculebuilder_4.0.0+dfsg-3.dsc
76909a88a61f7e5e101aa53cafc0e9e0 5516 science optional
macromoleculebuilder_4.0.0+dfsg-3.debian.tar.xz
a81aa620f437c24daa987e5463ec5383 7561 science optional
macromoleculebuilder_4.0.0+dfsg-3_source.buildinfo
-----BEGIN PGP SIGNATURE-----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=zzXK
-----END PGP SIGNATURE-----
--- End Message ---
